BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF08FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 1047 0.0
>3x_Contig1253
Length = 5628
Score = 1047 bits (528), Expect = 0.0
Identities = 649/679 (95%), Gaps = 8/679 (1%)
Strand = Plus / Minus
Query: 87 ttgtaaagttggccttttaaaaagcaaatacttctatgacattgcttctgaaatcgctgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 ttgtaaagttggccttttaaaaagcaaatacttctatgacattgcttctgaaatcgctgt 2402
Query: 147 ccttgtgttacatccaaatttttgggtgcgagagtatactatgctactattgatagaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2401 ccttgtgttacatccaaatttttgggtgcgagagtatactatgctactattgatagaaat 2342
Query: 207 ggcatcgaaactttcaaagcctgagctgtactgtatgatgtacccgatcatcaaaccatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 ggcatcgaaactttcaaagcctgagctgtactgtatgatgtacccgatcatcaaaccatt 2282
Query: 267 ttttgaatttgatgttgaaatgacgtgggagtctctattgattagctcaaaaaaaccagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 ttttgaatttgatgttgaaatgacgtgggagtctctattgattagctcaaaaaaaccagt 2222
Query: 327 ttccagaaatgtctacaatcttttatgtagttggacattaagatcatcgaagtcgctgtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 ttccagaaatgtctacaatcttttatgtagttggacattaagatcatcgaagtcgctgtt 2162
Query: 387 ttggaagcatttgccgaccaaaaatgtaaactcttttggtaataatactgtggaattcat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 ttggaagcatttgccgaccaaaaatgtaaactcttttggtaataatactgtggaattcat 2102
Query: 447 atctaagaatttttctgtgaataattatggctttcagactaatttcaagccctccaaatc 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2101 atctaagaatttttctgtgaataattatggctttcagactaatttcaagccctcaaaatc 2042
Query: 507 gcatgtaactttctattgctaatattgaaataccctttgac-actganggacagaactgg 565
||||||||| ||||||||||||||||||||||||| ||||| ||||| | ||||||||
Sbjct: 2041 gcatgtaac-ttctattgctaatattgaaataccc-ttgacaactgaggacaagaactgg 1984
Query: 566 atagacaagataaaaaatgtgggggttgtcagagacaggtttatggaagctagctgcact 625
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1983 atagacaagataaaaaatgt-ggggttgtcagagacagaattatggaagctagctgcact 1925
Query: 626 -agaacatacgtttttcgggtttaaaagatgttttccaggaaacctgaaacttaatcc-a 683
||| ||||||| |||||||||| ||||||||| |||||||||||||||||| ||||| |
Sbjct: 1924 aagaccatacgtctttcgggtttcaaagatgttatccaggaaacctgaaactcaatccaa 1865
Query: 684 cgaatatgatgattttttaacctgaagaaaaatcttttggaactcctcaaaccgttcttt 743
||||||||||||| ||||||| ||||| | || |||||| |||||||| |||||||
Sbjct: 1864 cgaatatgatgatattttaactgaaagaagagtc-tttggactccctcaaactgttcttt 1806
Query: 744 ttggacattgaagctgttg 762
|| ||||||||||||||||
Sbjct: 1805 tt-gacattgaagctgttg 1788
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7249
Number of Sequences: 1807
Number of extensions: 7249
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)