BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF08RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 906 0.0
>3x_Contig1761
Length = 23186
Score = 906 bits (457), Expect = 0.0
Identities = 587/616 (95%), Gaps = 11/616 (1%)
Strand = Plus / Minus
Query: 43 gcttttttttttaat-tat-caaattacagcgctctgctacaaaataatgataaattgaa 100
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 19244 gcttttttttttaatatatacaaattacagcgctctgctacaaaataatgataaattgaa 19185
Query: 101 tctgaaattatatgccaaatgttcgttatagtgagctatcagtaactgattagctcaaac 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19184 tctgaaattatatgccaaatgttcgttatagtgagctatcagtaactgattagctcaaac 19125
Query: 161 ttgattctaatgcttgaattggtcgttaatgatcattgactaaggtattatgatttttac 220
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct: 19124 ttgattctaatgcttgaattggtcgttaatgatcattgactaaggtattaggagtcttac 19065
Query: 221 taacttcagaattagtttttcttattggcctcggtggattcactttcggttctggcatta 280
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 19064 taacttcagaattagtttttcttagtggcctcggtggattcactttcggttctggcatta 19005
Query: 281 tgtggcttcttttcgccatcttggggggcagctttttcagtttgacttacagttttggca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19004 tgtggcttcttttcgccatcttggggggcagctttttcagtttgacttacagttttggca 18945
Query: 341 tcaacagcatctaaacttagttccgtccttaactctaacaactgcatccttttcttgttg 400
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 18944 tcaacagcatctaaacttagtt-cgtccttaactctaacaactgcatccttttcttgttg 18886
Query: 401 ctcttcttccttcatgatttccacttgttccttcaactgtgccatctttaaatttgttag 460
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 18885 ctcttcttccttcatgatttccacttgttccttcaactgtgccatc-ttagatttgttag 18827
Query: 461 tagcagaatcctcttcaacaacatttgacttaacttcatggtacaactcgtctggaata- 519
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 18826 tagcagaatcctcttcaacaacattgaccttaacttcatggtacaactcgtctggaatac 18767
Query: 520 cagatnagacgtcacaaaaagcgtcatacaacgttttctttagacccatatcatcgttaa 579
||||| |||||||||| || |||||||||||||| ||||| ||| |||||| || |||
Sbjct: 18766 cagataagacgtcacataaggcgtcatacaacgtcttcttagaaccaatatcaccg-taa 18708
Query: 580 gtgtattgcggtagccataactaggtaaagttgatggaattcttatcctgcagccctcat 639
||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||
Sbjct: 18707 gtgta-tgcggtagccataacta-gtaaagttgatggaa-tcttatccttcag-cctcat 18652
Query: 640 gttttaaccaaatctt 655
| ||||||||||||||
Sbjct: 18651 g-tttaaccaaatctt 18637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,959
Number of Sequences: 1807
Number of extensions: 10959
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)