BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF09FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 543 e-154
3x_Contig214 371 e-102
>3x_Contig1485
Length = 9830
Score = 543 bits (274), Expect = e-154
Identities = 283/286 (98%)
Strand = Plus / Plus
Query: 87 ttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaactgaac 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9529 ttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaagtgaac 9588
Query: 147 cgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttaccattg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9589 cgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttaccattg 9648
Query: 207 cattccgctttaacttctgatgatcaaaagatagtcttcaaaaaattcaaatccagaaga 266
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9649 cattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatccagaaga 9708
Query: 267 aagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgttgct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9709 aagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgttgct 9768
Query: 327 accattgacaccggtcgtgttaaaacattaaattacgatccttcca 372
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9769 accattgacaccggtcgtgttaaaacattaaattacgatccttcca 9814
>3x_Contig214
Length = 1381
Score = 371 bits (187), Expect = e-102
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand = Plus / Plus
Query: 472 tatattcgaagaatgtttatgattcgatggctgagttacctgtgcctgaaatcaaaaggg 531
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 26 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 85
Query: 532 tgactttagaatctttgtatttatcagctagaatcatgggcataaaaaacgttactaagt 591
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 86 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 145
Query: 592 ttttacagccaggcatatacccgncgtctttatcctcgttgggataagcncagc-atttt 650
||||||||| |||| || ||||| || ||||||||||||||| | |||| ||| | | |
Sbjct: 146 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcaaatat 205
Query: 651 ttactacgacaggactaattgatgatacatacaacacgtttacacagctaggtaagtttg 710
| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct: 206 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 265
Query: 711 ggagcttgctacctggcatggatagcatacatggcaaactatagattttttct 763
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 266 tgagcttgctacctggcatggatagcaaacatggtaaactattgattttttct 318
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7400
Number of Sequences: 1807
Number of extensions: 7400
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)