BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF09RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 940 0.0
>3x_Contig1303
Length = 8112
Score = 940 bits (474), Expect = 0.0
Identities = 759/825 (92%), Gaps = 22/825 (2%)
Strand = Plus / Minus
Query: 45 cttggtccagttaggctgctcattattgcatggtactcgacctattcaagtgtcagggtt 104
||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||
Sbjct: 7048 cttggtccagttaggctgctcattag-gcatggta-tcg-cctattcaagtgttagggtt 6992
Query: 105 actatttaccttgacttctgttaacaacggtaaggttgacaaaacaaaaattatagcacg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6991 actatttaccttgacttctgttaacaacggtaaggttgacaaaacaaaaattata-cacg 6933
Query: 165 catatcatagacaaagatattgcggcaattgttgatcttccatgcttggcaacatcaacg 224
|| |||| |||||| ||||| |||||||| |||| ||||||| |||||||||||||||||
Sbjct: 6932 ca-atca-agacaa-gatat-gcggcaat-gttg-tcttcca-gcttggcaacatcaacg 6880
Query: 225 gtattgatgtcaattgctcaaagatacatttcaccatataaatggtccgtattttttagt 284
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6879 gtattgatgtcaattgctcaaagatacatttcaccagataaatggtccgtattttttagt 6820
Query: 285 ttggcatacgcaattctgggtacggctcagaatatttatttgaagaaattcaagaaataa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6819 ttggcatacgcaattctgggtacggctcagaatatttatttgaagaaattcaagaaataa 6760
Query: 345 aggtcttgatccattctgataaaatattactttcattcttcaaagaaagaatctctgctc 404
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 6759 gggtcttgatccattctgataaaatattactttcattcttcaaggaaagaatctct-ctc 6701
Query: 405 cgcaaattctcttgaatcattcagtttttatcgtcctcagtttgatcgttttctgaagac 464
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6700 cgcaaattctcttgaatcattcggtttttatcgtcctcagtttgatcgttttctgaagac 6641
Query: 465 aaagatataggactcatcggcagcttattccaaatgtt-caattcgctttt-aagcctca 522
|||||||| ||||||||||| || ||||||| |||||| |||||||||||| |||||||
Sbjct: 6640 aaagatattggactcatcggtagtttattcc-aatgttccaattcgcttttcaagcctct 6582
Query: 523 gttctcgctacttatcttctggacttcagcattgatgcgttccagactttgctgttaagt 582
||||||| | |||| ||||| |||||||||||||| ||||||||||||||||| | ||||
Sbjct: 6581 gttctcgtttcttagcttctcgacttcagcattgaggcgttccagactttgctttaaagt 6522
Query: 583 catgacttccttatccttcaa-ccaagttcatagctc-actgtgctaaatcacc-tctat 639
||||||||||||||||||||| |||||||||||| || ||||||||||||| || ||||
Sbjct: 6521 catgacttccttatccttcaacccaagttcataggtcaactgtgctaaatctccttctaa 6462
Query: 640 ttctgnagtact-atactcaccatcgatcgatgataa-tatggcgagtgatttgcgtgtg 697
||||| ||| || ||| ||||||||||||||||| || ||||||||||||| ||||||||
Sbjct: 6461 ttctgtagttctaatattcaccatcgatcgatgaaaattatggcgagtgatatgcgtgtg 6402
Query: 698 tagtaatccttatttgagtttgcaaaatgaatttgttgttattccacaaggctgct-ata 756
|| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||| |||
Sbjct: 6401 taataatccttagttgagtttgcaaaatgaatttgttgttagtccacaaagctgctaata 6342
Query: 757 tttaaaagtcctggcacact-cctttaaatttcaaatggcggatatcaaaaataatattt 815
|| |||||||||| |||||| ||||||||| |||| || | || |||| ||||||||||
Sbjct: 6341 ttaaaaagtcctgtcacactccctttaaatatcaagtgtcagagatcagaaataatattc 6282
Query: 816 tggccatttgaattaatgaaagggcacgctaaagagaacttagcc 860
|| ||||||||| |||||||||||||| |||||||||| ||||
Sbjct: 6281 tgcacatttgaataaatgaaagggcacgtaaaagagaactaagcc 6237
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7886
Number of Sequences: 1807
Number of extensions: 7886
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)