BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF10FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1251 1185 0.0
>3x_Contig1251
Length = 6331
Score = 1185 bits (598), Expect = 0.0
Identities = 674/690 (97%), Gaps = 7/690 (1%)
Strand = Plus / Minus
Query: 88 tgtcaattgcatacagtaccccctacttaatgcattaatgtaatactattagccatttat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2250 tgtcaattgcatacagtaccccctacttaatgcattaatgtaatactattagccatttat 2191
Query: 148 cggcagctgcctcggatagttggatgaatatctgcatctcacacacgtgacttctgcaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2190 cggcagctgcctcggatagttggatgaatatctgcatctcacacacgtgacttctgcaat 2131
Query: 208 catcttcacagtcctgtcatcttaatgtaggagcattgatggaacgcagatcaatcgcta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2130 catcttcacagtcctgtcatcttaatgtaggagcattgatggaacgcagatcaatcgcta 2071
Query: 268 caccatactgacctatcaatcattcatgaagccattcgtaatcaataaatcttctttctg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2070 caccatactgacctatcaatcattcatgaagccattcgtaatcaataaatcttctttctg 2011
Query: 328 gtatctttattgatatcatcgtttaagctcactataacccaaaattgtatataaatcacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010 gtatctttattgatatcatcgtttaagctcactataacccaaaattgtatataaatcacc 1951
Query: 388 atacaatatccgaaatgccactttcacgaggattaggttcatcaaaggacagagtacaac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1950 atacaatatccgaaatgccactttcacgaggattaggttcatcaaaggacagagtacaac 1891
Query: 448 acttaggacagagccacagaaaataataatcaaaatgctcagtttcacagaagtctcaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1890 acttaggacagagccacagaaaataataatcaaaatgctcagtttcacagaagtctcaga 1831
Query: 508 atgtgttcaaaagtcattggcatcattggcaccaggctacttgtctaaatggttaccttt 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1830 atgtgttcaaaagtcattggcatcattggcaccaggctacttgtctaaatggttactttt 1771
Query: 568 catctctgttgggtcgatctttaattcggttcaaacatacatcaatattgatttaacccc 627
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1770 catctctgttgtgtcgatctttaattcggttcaaacatacatcaatattgatttaa-ccc 1712
Query: 628 gtagagtgtatgaaaacaaaccatatgaaacgacttcgttgagcgcacgtactttttggt 687
||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||
Sbjct: 1711 gtagagtgtatgaaaacaaaccaaatgaaacgactccgttgagcgcacgtac-ttttggt 1653
Query: 688 acctggacttttggttccatgttatttttagactattcgggggcattatacctaaccgag 747
|||||||| ||||||| |||| |||| ||||||||| | || ||||||||| ||||||||
Sbjct: 1652 acctggac-tttggtttcatg-tattattagactatac-ggtgcattatacttaaccgag 1596
Query: 748 aacccacgtttatcaattggactttcattt 777
|| ||||||||||||||| |||||||||||
Sbjct: 1595 aa-ccacgtttatcaatt-gactttcattt 1568
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6709
Number of Sequences: 1807
Number of extensions: 6709
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)