BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF10RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1383 1318 0.0
>3x_Contig1383
Length = 6139
Score = 1318 bits (665), Expect = 0.0
Identities = 786/812 (96%), Gaps = 11/812 (1%)
Strand = Plus / Plus
Query: 43 cttgctatttgccagtcctgaatgttccaacatcaagcggacctctaatcggagaaacta 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2188 cttgctatttgccagtcctgaatgttccaacatcaagcggacctctaatcggagaaacta 2247
Query: 103 atgttgaagggttatttattgctagtggccactcttgttggggtattaacaacgctccgg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2248 atgttgaagggttatttattgctagtggccactcttgttggggtattaacaacgctccgg 2307
Query: 163 caacaggtaaagttatgagtgaactattacttgacggtgaagctaaatccgctgatatta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2308 caacaggtaaagttatgagtgaactattacttgacggtgaagctaaatccgctgatatta 2367
Query: 223 gtgcattggatcccagcttatactttgatgcatctatctttgaataaaatgaatccattg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2368 gtgcattggatcccagcttatactttgatgcatctatctttgaataaaatgaatccattg 2427
Query: 283 caaagtttttatgtgttttactatcatttcatttctttcattctgtcggcatataaacat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2428 caaagtttttatgtgttttactatcatttcatttctttcattctgtcggcatataaacat 2487
Query: 343 caatcgatttctaacctctttaataatttaattactgccatcattatcccgttaaatatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2488 caatcgatttctaacctctttaataatttaattactgccatcattatcccgttaaatatt 2547
Query: 403 tttctatatcatgtattcagagaacacacaatttgcaaacccataaccattcattatcat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2548 tttctatatcatgtattcagagaacacacaatttgcaaacccataaccattcattatcat 2607
Query: 463 tatatactgtatatttaccagttactatttaaaatctatgtggttctttgaagaatgaag 522
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2608 tatatactgtatatttaccagttactatttaaaatctatgtggttcttgaaagaatgaag 2667
Query: 523 ttttgaatggaaactccatattttcatttattcatattcttgaaagcagctctcgctcca 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2668 -tttgaatggaaactccatattttcatttattcatattcttgaaagcagctctcgctcca 2726
Query: 583 tttgcagcatccgnattggcttcttttctg-ttgttcagagtgtacagtacctctgctct 641
||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2727 tttgcagcatccgtatt-gcttcttttctgtttgttcagagtgtacagtacctctgctct 2785
Query: 642 actactttgaac-aacatattatcttgc-gtgacttttgtggctttgat-aaatggaaca 698
||||||| ||| ||||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct: 2786 actacttgaaacaaacatattatcttgcggtgactttcgtggctttgatgaagtggaaca 2845
Query: 699 agtttcaggcggtttcaaacttaagttatcaactttctttgttcaatttctcagactcca 758
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 2846 agtttcaggcggtttcaaacttaagttatcaactttc-ttggtcaatttctcagactcca 2904
Query: 759 aggcggcccttaatcttgaataagccttcaacccatttttgcctggagataattcacgaa 818
|||||| ||||| |||||||||||| ||||||||||||||||| || || | |||||||
Sbjct: 2905 aggcgg-ccttagtcttgaataagctatcaacccatttttgccttga-attaatcacgaa 2962
Query: 819 atccctcggaagcactttttgggtaatgcaat 850
||| ||||| |||||||||| |||||||||||
Sbjct: 2963 atcactcgg-agcacttttt-ggtaatgcaat 2992
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8198
Number of Sequences: 1807
Number of extensions: 8198
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)