BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF11FM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig883 1106 0.0
>3x_Contig883
Length = 3346
Score = 1106 bits (558), Expect = 0.0
Identities = 653/669 (97%), Gaps = 13/669 (1%)
Strand = Plus / Plus
Query: 86 ccactgattggagaaaattgagattgttatgtagtggtccgttgtcttaattaaggacgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 ccactgattggagaaaattgagattgttatgtagtggtccgttgtcttaattaaggacgt 1465
Query: 146 ggaattggatgcacatacaaaataaactgtctgatattgcccgatgagaaccgaaacttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 ggaattggatgcacatacaaaataaactgtctgatattgcccgatgagaaccgaaacttc 1525
Query: 206 cattcagaaattgttgcgaatggactgagactaacattaccatgttcacaaagtacgggt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1526 cattcagaaattgttgcgaatggactgagactaacattaccatgttcacaaagtacgggt 1585
Query: 266 taactaagccttcagaataggtttttgtatattttcattacatgaacggtaaagtagtag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 taactaagccttcagaataggtttttgtatattttcattacatgaacggtaaagtagtag 1645
Query: 326 tacctgcagaaaaaatgtacctgttttgaaagaaatagacatcgattatacacatttctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 tacctgcagaaaaaatgtacctgttttgaaagaaatagacatcgattatacacatttctc 1705
Query: 386 gagaacagaaacaaaaagaaatgccgttctttggacttctaaaataattaagatcgaagt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 gagaacagaaacaaaaagaaatgccgttctttggacttctaaaataattaagatcgaagt 1765
Query: 446 ttctccgacggggcctttactgaagcaatcagcttaaactttccagtcaaagcctccaga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1766 ttctccgacggggcctttactgaagcaatcagcttaaactttccagtcaaagcctccaga 1825
Query: 506 tattatgtcgcctacaatttccttttcggttagtatcagtaccaatatcatgcagcactg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 tattatgtcgcctacaatttccttttcggttagtatcagtaccaatatcatgcagcactg 1885
Query: 566 ataagaaccttgttttttctgtcggtcaaaatgtttcttatctgaaaag-agaagagtcc 624
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1886 ataagaaccttgttttttctgtcggtcaaaatgtttcttatctgaaaagaagaagagtcc 1945
Query: 625 g-aaaaactcta-tac-ggttatctga-ccagctc-aacctggtcgctctcga-cattga 678
| |||||||||| ||| |||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct: 1946 gaaaaaactctattacgggttatctgacccagctcaaacctggtcgctctcgagcattga 2005
Query: 679 gat-cag-acatgtcttcaat-acactgatacttact--aaatgagggggttgttt-acc 732
||| ||| ||||||||||||| ||||||||||||||| | ||||| ||||||||| ||
Sbjct: 2006 gatacagaacatgtcttcaataacactgatacttacttaatatgagtgggttgtttcact 2065
Query: 733 taaattttc 741
|||||||||
Sbjct: 2066 taaattttc 2074
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6223
Number of Sequences: 1807
Number of extensions: 6223
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)