BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZF11RM1.SCF screened BAC_end (914 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1714 1205 0.0 >3x_Contig1714 Length = 18873 Score = 1205 bits (608), Expect = 0.0 Identities = 693/715 (96%), Gaps = 7/715 (0%) Strand = Plus / Minus Query: 47 cttctgctatcaataccgtatattgctggaacgtatgctctctttcaaccaagtacctaa 106 |||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| Sbjct: 5209 cttctgctatcaataccgtagacagctggaacgt-tgctctctttcaaccaagtacctaa 5151 Query: 107 agaagattgagctaaccagtgagaatattcttcggtgtaatgagcaatgactaaaccagc 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5150 agaagattgagctaaccagtgagaatattcttcggtgtaatgagcaatgactaaaccagc 5091 Query: 167 aacatgaattctgttggattcaaaataacgtggtaatccttccacgtattcatttattaa 226 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 5090 aacatgaattctgttggattcaaaataacgtggtaatccttccacgtattcatccattaa 5031 Query: 227 tttacggtcagggacaccgtagttaccaaccaatgggaaagtgataactaaaatctgacc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5030 tttacggtcagggacaccgtagttaccaaccaatgggaaagtgataactaaaatctgacc 4971 Query: 287 ctcataagaaggatctgtgatggactctgggtaaccgaccataccagtttggaaaaccaa 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4970 ctcataagaaggatctgtgatggactctgggtaaccgaccataccagtttggaaaaccaa 4911 Query: 347 ttcaccggctgcagtggtttcggcaccaaaggagtaaccttgtaaagtagttccatcctt 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4910 ttcaccggctgcagtggtttcggcaccaaaggagtaaccttgtaaagtagttccatcctt 4851 Query: 407 taattccaaggtaatcatacgatcaccagtagactccattggaggggtgataggagcagt 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4850 taattccaaggtaatcatacgatcaccagtagactccattggaggggtgataggagcagt 4791 Query: 467 aggagtgataatagacataacggaagtttgtattttcttaagcgtaaagggtgtttcaaa 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4790 aggagtgataatagacataacggaagtttgtattttcttaagcgtaaagggtgtttcaaa 4731 Query: 527 cgatgaactaacctattggatttattttcacttcttttgcttcttt-aaagcagcaacgg 585 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 4730 cgatgaactaacctattggatttattttcacttcttttgcttctttaaaagcagcaacgg 4671 Query: 586 ngggggacttanaagtaaa--taaacaatgaggntttttacccgattggatcctttctaa 643 |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 4670 ggggggacttaaaagtaaaataaaacaatgaggttttttacccgattggatcctttctaa 4611 Query: 644 ctatgtgtaataatgaaaagaatcgcactaaatgaatggcaattgatgttttagtttaat 703 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 4610 ctatgtgtaataatgaaaagaatcgcactaaatgaatggcaattgatgtttaagttt-at 4552 Query: 704 aattgacttctaatttaccctctctttagtttttggtaagnaattaatcaattaa 758 ||||||| |||||||| |||||| |||||| | |||||| |||||||||||||| Sbjct: 4551 aattgac-tctaattttacctctc-ttagttataggtaagaaattaatcaattaa 4499 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6889 Number of Sequences: 1807 Number of extensions: 6889 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 914 length of database: 10,358,551 effective HSP length: 16 effective length of query: 898 effective length of database: 10,329,639 effective search space: 9276015822 effective search space used: 9276015822 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)