BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZF11RM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1714                                                        1205   0.0  

>3x_Contig1714 
          Length = 18873

 Score = 1205 bits (608), Expect = 0.0
 Identities = 693/715 (96%), Gaps = 7/715 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   cttctgctatcaataccgtatattgctggaacgtatgctctctttcaaccaagtacctaa 106
            |||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||
Sbjct: 5209 cttctgctatcaataccgtagacagctggaacgt-tgctctctttcaaccaagtacctaa 5151

                                                                        
Query: 107  agaagattgagctaaccagtgagaatattcttcggtgtaatgagcaatgactaaaccagc 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5150 agaagattgagctaaccagtgagaatattcttcggtgtaatgagcaatgactaaaccagc 5091

                                                                        
Query: 167  aacatgaattctgttggattcaaaataacgtggtaatccttccacgtattcatttattaa 226
            |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 5090 aacatgaattctgttggattcaaaataacgtggtaatccttccacgtattcatccattaa 5031

                                                                        
Query: 227  tttacggtcagggacaccgtagttaccaaccaatgggaaagtgataactaaaatctgacc 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5030 tttacggtcagggacaccgtagttaccaaccaatgggaaagtgataactaaaatctgacc 4971

                                                                        
Query: 287  ctcataagaaggatctgtgatggactctgggtaaccgaccataccagtttggaaaaccaa 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4970 ctcataagaaggatctgtgatggactctgggtaaccgaccataccagtttggaaaaccaa 4911

                                                                        
Query: 347  ttcaccggctgcagtggtttcggcaccaaaggagtaaccttgtaaagtagttccatcctt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4910 ttcaccggctgcagtggtttcggcaccaaaggagtaaccttgtaaagtagttccatcctt 4851

                                                                        
Query: 407  taattccaaggtaatcatacgatcaccagtagactccattggaggggtgataggagcagt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4850 taattccaaggtaatcatacgatcaccagtagactccattggaggggtgataggagcagt 4791

                                                                        
Query: 467  aggagtgataatagacataacggaagtttgtattttcttaagcgtaaagggtgtttcaaa 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4790 aggagtgataatagacataacggaagtttgtattttcttaagcgtaaagggtgtttcaaa 4731

                                                                        
Query: 527  cgatgaactaacctattggatttattttcacttcttttgcttcttt-aaagcagcaacgg 585
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4730 cgatgaactaacctattggatttattttcacttcttttgcttctttaaaagcagcaacgg 4671

                                                                        
Query: 586  ngggggacttanaagtaaa--taaacaatgaggntttttacccgattggatcctttctaa 643
             |||||||||| |||||||   ||||||||||| ||||||||||||||||||||||||||
Sbjct: 4670 ggggggacttaaaagtaaaataaaacaatgaggttttttacccgattggatcctttctaa 4611

                                                                        
Query: 644  ctatgtgtaataatgaaaagaatcgcactaaatgaatggcaattgatgttttagtttaat 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 4610 ctatgtgtaataatgaaaagaatcgcactaaatgaatggcaattgatgtttaagttt-at 4552

                                                                   
Query: 704  aattgacttctaatttaccctctctttagtttttggtaagnaattaatcaattaa 758
            ||||||| ||||||||  |||||| |||||| | |||||| ||||||||||||||
Sbjct: 4551 aattgac-tctaattttacctctc-ttagttataggtaagaaattaatcaattaa 4499


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6889
Number of Sequences: 1807
Number of extensions: 6889
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)