BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF12FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1526 969 0.0
>3x_Contig1526
Length = 11842
Score = 969 bits (489), Expect = 0.0
Identities = 619/648 (95%), Gaps = 11/648 (1%)
Strand = Plus / Plus
Query: 86 tattggaaaaatggaaggaattcatacaaacagttgaatcatttgaattacaatcctcta 145
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 781 tattggaaaaatggaaggaattcagacaaacagttgaatcatttgaattacaatcctcta 840
Query: 146 ctttggaaaactcgtttgtgtttaattttgtggaaggttctttggtgaaggctgtcagaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctttggaaaactcgtttgtgtttaattttgtggaaggttctttggtgaaggctgtcagaa 900
Query: 206 atggagaatggttgttattggatgaagtcaacttggcctcggcagacacgcttgaaaaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 atggagaatggttgttattggatgaagtcaacttggcctcggcagacacgcttgaaaaca 960
Query: 266 tagctgatttgctttcagaaagtgactctagaagtatacttctatctgaaaaaggtgagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tagctgatttgctttcagaaagtgactctagaagtatacttctatctgaaaaaggtgagg 1020
Query: 326 cagaatcgataaaagcccatccagatttcagaattttcgcttgtatgaaccctgctacag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cagaatcgataaaagcccatccagatttcagaattttcgcttgtatgaaccctgctacag 1080
Query: 386 atgtcggtaagatatatttaccaccaggtattcgatcaagatttaccgaagtttatgttc 445
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 atgtcggtaagagagatttaccaccaggtattcgatcaagatttaccgaagtttatgttc 1140
Query: 446 attctcctgaccgtgacatctctgatctattgtctatcatttgac-agtacatttcaaag 504
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1141 attctcctgaccgtgacatctctgatctattgtctatca-ttgacaagtacatttcaaag 1199
Query: 505 tatagcgtaagcgacgaatgggttggtaacgacatcgctgaactttattttg-agcaaaa 563
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 1200 tatagcgtaagcgacgaatgggttggtaacgacatcgctgaactttatttagaagcaaaa 1259
Query: 564 a-gcttgcagaagct-attagattgtcgatggttccaatc-aagacccca-ttnatcatc 619
| ||||||||||||| || ||||||||||||||||||||| ||||||||| || | ||||
Sbjct: 1260 aggcttgcagaagctaataagattgtcgatggttccaatcaaagaccccatttcagcatc 1319
Query: 620 cgtacattgacca-tacattac-ttatgtcacggactttgt-catatttatggcctaaaa 676
||||||||||||| ||||||| ||||||||||||| |||| |||||||||||||||| |
Sbjct: 1320 cgtacattgaccagaacattactttatgtcacggacattgtacatatttatggcctaaga 1379
Query: 677 cattctttgt-ccaaagattttgtatgggattttttaacctgttgaat 723
| ||||||| | || |||||||||||| |||||| | |||||||||
Sbjct: 1380 cgatctttgtacgaaggattttgtatggcatttttaacactgttgaat 1427
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,754
Number of Sequences: 1807
Number of extensions: 16754
Number of successful extensions: 359
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)