BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF12RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1110 0.0
>3x_Contig1775
Length = 26320
Score = 1110 bits (560), Expect = 0.0
Identities = 664/683 (97%), Gaps = 12/683 (1%)
Strand = Plus / Plus
Query: 49 cccagcagagcaatcaattactcatcaaaatgtttattagactactacgagctggaaaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14037 cccagcagagcaatcaattactcatcaaaatgtttattagactactacgagctggaaaag 14096
Query: 109 agcacgcaacaacagctagaagagttgtatatgcttcgggacaccatgtcggtgaatcgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14097 agcacgcaacaacagctagaagagttgtatatgcttcgggacaccatgtcggtgaatcgt 14156
Query: 169 ggacgaaatcagaaacaaggagattggctccaaatttgatcacttatgcgttgttcattg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14157 ggacgaaatcagaaacaaggagattggctccaaatttgatcacttatgcgttgttcattg 14216
Query: 229 gaacaatggtcacttggccttattgggtcaaagaatattcttatgtaacgcatggtaagc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14217 gaacaatggtcacttggccttattgggtcaaagaatattcttatgtaacgcatggtaagc 14276
Query: 289 caaactggtcgccataatctgttaagacgaaagctgtatgaatttctcattccttcgtca 348
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14277 caaactggtcgccataatctgttaagacgaaggctgtatgaatttctcattccttcgtca 14336
Query: 349 aacaaaatactgcatttgctatggtaaaaaccctttaattttccaatactgactctacta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14337 aacaaaatactgcatttgctatggtaaaaaccctttaattttccaatactgactctacta 14396
Query: 409 gtttgctatgttgcatggagttaaaatccgtttgcgttcaatactgatacccttcgcgct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14397 gtttgctatgttgcatggagttaaaatccgtttgcgttcaatactgatacccttcgcgct 14456
Query: 469 caagactttttttttcctttctctt-aaagtcattatacctctttattagttatctggca 527
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14457 caagactttttttttcctttctcttaaaagtcattatacctctttattagttatctggca 14516
Query: 528 cctcatacttagctagctcatctttggtatctatttatactatcaataaaa-ttaactgg 586
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 14517 cctcatacttagctagctcatctttgttatctatttatactatcaataaaatttaactgg 14576
Query: 587 c-agcattac-tagcggatatca-tagtttttatt-aaatg-aagcattgatattt-att 640
| |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct: 14577 caagcattacttagcggatatcattagtttttattaaaatgaaagcattgatatttaatt 14636
Query: 641 tatcntatta-ttttgatgaagttaagttttaaaat-tattctttattctac-ggggtct 697
|||| ||||| ||||||||| |||||||||| |||| ||||||||| ||||| | |||||
Sbjct: 14637 tatcttattatttttgatgaggttaagttttcaaatatattcttta-tctactgtggtct 14695
Query: 698 agcctttggtccccattttttgg 720
||||||||||||||| |||||||
Sbjct: 14696 agcctttggtccccagtttttgg 14718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,338
Number of Sequences: 1807
Number of extensions: 23338
Number of successful extensions: 287
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)