BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG01FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1179 0.0
>3x_Contig1749
Length = 22923
Score = 1179 bits (595), Expect = 0.0
Identities = 733/762 (96%), Gaps = 19/762 (2%)
Strand = Plus / Minus
Query: 87 cggtttacaaagcgatttattattccccttatgaaagtagctgcactgtttgaaatacag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13263 cggtttacaaagcgatttattattccccttatgaaagtagctgcactgtttgaaatacag 13204
Query: 147 cgaaccgaaacacgaatacagtgcagcaaattcccctatagcagtatggtgggctccatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13203 cgaaccgaaacacgaatacagtgcagcaaattcccctatagcagtatggtgggctccatt 13144
Query: 207 gccttatgaaccaagctatccttactggcctgacggatataccccaagtgtatcctgtag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13143 gccttatgaaccaagctatccttactggcctgacggatataccccaagtgtatcctgtag 13084
Query: 267 tgccatgttctaaggtatgcagatttccgcatcttagcgcctaattattatttgtatttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13083 tgccatgttctaaggtatgcagatttccgcatcttagcgcctaattattatttgtatttt 13024
Query: 327 gtttagaacgattgggcattttgtttgtggtttagataagggaaattatcttccatacaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13023 gtttagaacgattgggcattttgtttgtggtttagataagggaaattatcttccatacaa 12964
Query: 387 aaatgtcatttccgttagcgtatatgaaaaaaaacatggatcgcagataaaagttaagat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12963 aaatgtcatttccgttagcgtatatgaaaaaaaacatggatcgcagataaaagttaagat 12904
Query: 447 aagccattccattctcttctatgccatttacagtgttatcctcaaagttagaattcggat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12903 aagccattccattctcttctatgccatttacagtgttatcctcaaagttagaattcggat 12844
Query: 507 acaaacgacagttctcgtacttgttattggcaagcgaaacttcaatggctaggtgaagag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12843 acaaacgacagttctcgtacttgttattggcaagcgaaacttcaatggctaggtgaagag 12784
Query: 567 atagtatataaactgctcagttatggaattaataaagtagcagaggttcatgagatgtta 626
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12783 aaagtatataaactgctcagttatggaattaataaagtagcagaggttcatgagatgtta 12724
Query: 627 gatctcgtttaattccgaagtgtcaa--tttactacggttat--atatagttcctaat-- 680
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 12723 gatctcgtttaattccgaagtgtcaatttttactacggttataaatatagttcctaataa 12664
Query: 681 aaccaagtgtaa-ttca--gaaagtaagaa--tttac-cccac-agttgtaccttgtgct 733
|||||||||||| |||| ||||||||||| |||| | ||| ||||||||||||||||
Sbjct: 12663 aaccaagtgtaagttcagtgaaagtaagaaatcttacgcgcacaagttgtaccttgtgct 12604
Query: 734 -ctt-ctttactttttaca-catttattaatat-ttcaaatacaag-tgttaaag-gcaa 787
||| ||||||| | |||| ||||||||||||| |||||||||||| |||||||| ||||
Sbjct: 12603 gcttgctttactatatacagcatttattaatatgttcaaatacaagttgttaaagcgcaa 12544
Query: 788 aattggcataagatggagtccactttagtttgggcaatccaa 829
||||| ||||||||||||||||||||| |||| || |||||
Sbjct: 12543 aattgcaataagatggagtccactttaggttggtcagtccaa 12502
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6281
Number of Sequences: 1807
Number of extensions: 6281
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)