BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG02RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1653 0.0
>3x_Contig1739
Length = 22061
Score = 1653 bits (834), Expect = 0.0
Identities = 864/871 (99%), Gaps = 3/871 (0%)
Strand = Plus / Minus
Query: 48 tttcatcaatttgcactgtagggagagtaagatatcatctcgttatttgaaagaaaggtc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9437 tttcatcaatttgcactgtagggagagtaagatatcatctcgttatttgaaagaaaggtc 9378
Query: 108 gcgaaagatcaggccgaataaaaagcttttggacccccgacttcatttgaaaaatacact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9377 gcgaaagatcaggccgaataaaaagcttttggacccccgacttcatttgaaaaatacact 9318
Query: 168 aacaatttggattacaattctttcagtaactaacgccgcgtataagcaaaagaagtgtga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9317 aacaatttggattacaattctttcagtaactaacgccgcgtataagcaaaagaagtgtga 9258
Query: 228 gacttattgccatcaatccagataaatcaacagataatcaataaacagaggaacttactg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9257 gacttattgccatcaatccagataaatcaacagataatcaataaacagaggaacttactg 9198
Query: 288 acatgcacagatcgaatagtcagagggccaattcacagcgtccatactctttaaacaatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9197 acatgcacagatcgaatagtcagagggccaattcacagcgtccatactctttaaacaatc 9138
Query: 348 cgttcagaaacgcttcggttgattccagtataaatcaatacgaaacagacacagatttcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9137 cgttcagaaacgcttcggttgattccagtataaatcaatacgaaacagacacagatttcc 9078
Query: 408 agaattgggtttcccaaaacacaaagcctatgccatatgctactggcagaagaaatgatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9077 agaattgggtttcccaaaacacaaagcctatgccatatgctactggcagaagaaatgatt 9018
Query: 468 ccagtctaagtttcaccgattctatcaatgaaacccctgaagaagaagatcacaacacag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9017 ccagtctaagtttcaccgattctatcaatgaaacccctgaagaagaagatcacaacacag 8958
Query: 528 aagattatttcatcgacctaaacactactaaggatgtaccaagaacgtctcgcgaagcga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8957 aagattatttcatcgacctaaacactactaaggatgtaccaagaacgtctcgcgaagcga 8898
Query: 588 ttaaccgtaacaagtatgtataaaacaaaaaaaaaaagacaaaccaaatcagcaattgag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8897 ttaaccgtaacaagtatgtataaaacaaaaaaaaaaagacaaaccaaatcagcaattgag 8838
Query: 648 cctgccgttatctgctgataccaccctattactactactaattatactactaataactgt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8837 cctgccgttatctgctgataccaccctattactactactaattatactactaataactgt 8778
Query: 708 acctctatcatctgatctgctctgtttcgtgtgaatattctccgagcctaaatcccagtg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8777 acctctatcatctgatctgctctgtttcgtgtgaatattctccgagcctaaatcccagtg 8718
Query: 768 cctttctgcttgtattttccaagagccgnctaaacttt-actactaatattagtacgtgc 826
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 8717 cctttctgcttgtattttccaagagccgtctaaactttaactactaatattagtacgtgc 8658
Query: 827 catttncattatatttncttatctagtactcgatcaaatggc-atgttacccgcactttc 885
||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 8657 catttccattatatttccttatctagtactcgatcaaatggcaatgttacccgcac-ttc 8599
Query: 886 aatgtgctgtcagatccgggaatcgaaaaaa 916
||||||||||||||||||| |||||||||||
Sbjct: 8598 aatgtgctgtcagatccggaaatcgaaaaaa 8568
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,216
Number of Sequences: 1807
Number of extensions: 12216
Number of successful extensions: 123
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)