BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG03FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig560 793 0.0
3x_Contig1350 420 e-117
>3x_Contig560
Length = 2642
Score = 793 bits (400), Expect = 0.0
Identities = 419/424 (98%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 93 ttgcctggaatttggtgggatcaatacacaaatggcccactaccagtaatattgtgtttg 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 ttgcctggaatttggtgggatcaatacacaaatggcccactaccagtaatattgtgtttg 2276
Query: 153 actcatttctacaaacagtatacaccaaggttatacgaattcaatataataatcaaccaa 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 actcatttctacaaacagtatacaccaaggttatacgaattcaatataataatcaaccaa 2336
Query: 213 ccttttcttcttcattctaacacgatcgtttggaagctgacagatcaatttttcatccat 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2337 ccttttcttcttcattctaacacgatcgtttggaagctgacagatcaatttttcatccat 2396
Query: 273 ggcctgttattccttgccatggtaaatcaaggcgcaacagggttggtaatcggactaata 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 ggcctgttattccttgccatggtaaatcaaggcgcaacagggttggtaatcggactaata 2456
Query: 333 agttggatttgtgctatcttgatggataatgggctactaccaggtactgactccttccaa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 agttggatttgtgctatcttgatggataatgggctactaccaggtactgactccttccaa 2516
Query: 393 ttggcgcctttcaaagacagctggaacagaagttctagcacattaaacagaccaagcgca 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2517 ttggcgcctttcaaagacagctggaacagaagttctagcacattaaacagaccaagcgca 2576
Query: 453 tttatgacaaacgatatgacatcggaagatctaaatgaggaagatgccgaagaacctcaa 512
||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct: 2577 gttatgacaaacga-atgacatcggaagatctaaatgagggagaggccggagaacctcaa 2635
Query: 513 gatg 516
||||
Sbjct: 2636 gatg 2639
>3x_Contig1350
Length = 6538
Score = 420 bits (212), Expect = e-117
Identities = 382/424 (90%), Gaps = 11/424 (2%)
Strand = Plus / Minus
Query: 525 cgcactttatgggtccagttcttggatacttttagaaggtgaaacactttttgtagataa 584
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6440 cgcacttta-gggtccagttcttgaatacttttagaaggtgaaacactttttgtagataa 6382
Query: 585 tgataatatttaaatctatcaatgcgttgattcaattacatggtgtatatacataaatag 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6381 tgataatatttaaatctatcaatgcgttgattcaattacatggtgtatatacataaatag 6322
Query: 645 gatttaaagaaacagttcaccccagatgagcttttctttttcatctgnctgcctcttttg 704
||||||||||||||||||| ||||| |||| || |||||||||||| ||||||| ||||
Sbjct: 6321 gatttaaagaaacagttca-accagaagagccttcctttttcatctg-ctgcctcctttg 6264
Query: 705 -acatccc-attgttttatctatcacattggacctccatagtcgtgatattctttctta- 761
||||||| ||||| | ||||| |||| | ||||||||||||||||||||||| |||||
Sbjct: 6263 aacatcccaattgtataatctagcacaattgacctccatagtcgtgatattctctcttag 6204
Query: 762 gaactccacatcttgctgagaattgtccagattttgcttggcatttgctaccttttgagc 821
||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct: 6203 gaactccacatcttgctgagatatgtccagattttgcttggcatctgctagcttttgagc 6144
Query: 822 taaaagctc-attgcctcatttagaagatactggagcataactttgccacctaa-cttaa 879
||||||||| |||||||||| |||| |||||| |||||| || | | ||||||| | |||
Sbjct: 6143 taaaagctcaattgcctcatctagaggatactcgagcatcacatcggcacctaaccataa 6084
Query: 880 accgaccttttaattaaggaatctttcggatagactgaagcctttactaaaaaacggttc 939
|||||| ||||||| ||| ||| ||||||| |||||| ||| |||||||||| || |||
Sbjct: 6083 cccgacc-tttaattcagg-atccttcggattgactgacgcc-ttactaaaaagcgtttc 6027
Query: 940 attt 943
||||
Sbjct: 6026 attt 6023
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7247
Number of Sequences: 1807
Number of extensions: 7247
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)