BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG03RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig680 1407 0.0
>3x_Contig680
Length = 2471
Score = 1407 bits (710), Expect = 0.0
Identities = 863/904 (95%), Gaps = 9/904 (0%)
Strand = Plus / Plus
Query: 45 ctttgaattgataccaccctattccaaatatcaccatcgggaaaagcaaagcaagtaaga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 ctttgaattgataccaccctattccaaatatcaccatcgggaaaagcaaagcaagtaaga 1059
Query: 105 aaggcaaaacaaatactatcattgttatgaatccagcgaacagtaacgtggaaagaataa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 aaggcaaaacaaatactatcattgttatgaatccagcgaacagtaacgtggaaagaataa 1119
Query: 165 aggaaaaagggctgattgaaaagataaatctgggattgttaaagggactttttctgatag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1120 aggaaaaagggctgattgaaaagataaatctgggattgttaaagggactttttctgaaag 1179
Query: 225 gatcccgtccaccaagtaccatgtttctcggcgtagaatggaaatttcgaagcgccatct 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 gatcccgtccaccaagtaccatgtttctcggcgtagaatggaaatttcgaagcgccatct 1239
Query: 285 tcacaggagagaccaaaatattctggttataatgtaaaagattcatccggggattcaaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tcacaggagagaccaaaatattctggttataatgtaaaagattcatccggggattcaaag 1299
Query: 345 ctgccaggagtgggaaccgtggcaccaaattcacaaactgacccgtcttgacacatccat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 ctgccaggagtgggaaccgtggcaccaaattcacaaactgacccgtcttgacacatccat 1359
Query: 405 gactagcaggactgtatgcttttaactttgtcaaggattgaaatggtcgcagcccaatct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 gactagcaggactgtatgcttttaactttgtcaaggattgaaatggtcgcagcccaatct 1419
Query: 465 gtgatttaacgcacaattgaaatcgatttatgggaagcatctcacagaagaatatcacaa 524
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1420 gtgatttaacgcacaattgaaatcgatttaggggaagcatctcacagaagaatatcacaa 1479
Query: 525 tgtctgatgtgcggaattgtattttctcagatttataccaataagcgattacttctggta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 tgtctgatgtgcggaattgtattttctcagatttataccaataagcgattacttctggta 1539
Query: 585 atgcaaaatgtcttcatagtcttgaaatctatgaagcttcttaa-ttacaaaggaatttt 643
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1540 atgcaaaatgtcttcatagtcttgaaatctatgaagcttcttaatttacaaaggaatttt 1599
Query: 644 ataggaatttc-aaggccaaattgtctatatcatcgcata-cccatactaagatcgcagg 701
||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1600 ataggaatttcaaaggccaaattgtctatatcatcgcaaaccccatactaagatcgcagg 1659
Query: 702 atgactnnnatatctgc-ttctgttcctttaaacttttggaatatttatactaca-tgnt 759
|||||| | |||||| |||||||||||||||||||||||||||| ||||||| || |
Sbjct: 1660 atgacttata-atctgctttctgttcctttaaacttttggaatattattactacattgtt 1718
Query: 760 ttaataggaaaaacttg-attatttatactattcccggttaacttttgtaaccaatttnc 818
| |||||||||||| || || || ||||| ||| ||| ||||||||||| | | ||
Sbjct: 1719 taaataggaaaaacatgaataatatatacatatccgggtaaacttttgtaaaccaattcg 1778
Query: 819 gtgcacattattatgaagacaccataatagggacaagtcatcccactcagtggactaatt 878
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1779 ttgcacattaatatgaagacaccattatagggacaagtcatcccactcagtggactaata 1838
Query: 879 tcttatcttgtatgct-ctgaatgtgaaaattatttaatccatttcacc-gntgataatt 936
|||||||| ||||||| |||||||||| | |||||||||||||||||| | ||||||||
Sbjct: 1839 tcttatctcgtatgctcctgaatgtgagatatatttaatccatttcaccggttgataatt 1898
Query: 937 caat 940
||||
Sbjct: 1899 caat 1902
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7055
Number of Sequences: 1807
Number of extensions: 7055
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)