BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG04FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1049 0.0
3x_Contig56 367 e-101
>3x_Contig1719
Length = 15804
Score = 1049 bits (529), Expect = 0.0
Identities = 576/589 (97%), Gaps = 2/589 (0%)
Strand = Plus / Plus
Query: 85 ttagtagagttttgaacgttggatatctggattgaatcattagtgctttttccagtgaga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2905 ttagtagagttttgaacgttggatatctggattgaatcattagtgctttttccagtgaga 2964
Query: 145 tacctttaactgacataagagcgcgaagataaagttcctttaccgtcataaggtttgttt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 tacctttaactgacataagagcgcgaagataaagttcctttaccgtcataaggtttgttt 3024
Query: 205 ttaccatggctgattgcattgattcatagttatgacaacattcaatttctttatttcttt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 ttaccatggctgattgcattgattcatagttatgacaacattcaatttctttatttcttt 3084
Query: 265 cgaactctgttcggaacatcttcaatgaggttaagtatatgctctgattagtgatatgat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 cgaactctgttcggaacatcttcaatgaggttaagtatatgctctgattagtgatatgat 3144
Query: 325 catggtttattacaacaagagactttcttgaataaagctctttgatgattaacgacatat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145 catggtttattacaacaagagactttcttgaataaagctctttgatgattaacgacatat 3204
Query: 385 cagtgagccattgcacggttgtgtcagcattcctggttcgtttaatatggaaatcattta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 cagtgagccattgcacggttgtgtcagcattcctggttcgtttaatatggaaatcattat 3264
Query: 445 taattactgtagtccaaatactcgttttcatcatatcagcactgtcactgacatttatac 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3265 aaattactgtagtccaaatactcgttttcatcatatcagcactgtcactgacattataac 3324
Query: 505 cagtagtctctttcacgaggtaaaatatgtgcttgcatcctgtcttctgtagcctgttct 564
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3325 cagtagtctcttccacgaggtaaaatatgtgcttgcatcctgtcttctgtagcctgttct 3384
Query: 565 tctgctccgaaaacctggtggctcttatact-attaccaaatcatctaatcgtttacgtt 623
||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||
Sbjct: 3385 tctgctccgaaaacctgttgtctcttatactaataaccaaatcatctaatcgtttacgtt 3444
Query: 624 tcacaatgaaatctaacgcgcactgtttgccctgattgtttatgctttg 672
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3445 ccacaatgaaatctaacgcgcactg-ttgccctgattgtttatgctttg 3492
>3x_Contig56
Length = 1175
Score = 367 bits (185), Expect = e-101
Identities = 248/269 (92%)
Strand = Plus / Plus
Query: 85 ttagtagagttttgaacgttggatatctggattgaatcattagtgctttttccagtgaga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttagtagagttttgaacgttggatatctggattgaatcattagtgctttttccagtgaga 267
Query: 145 tacctttaactgacataagagcgcgaagataaagttcctttaccgtcataaggtttgttt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tacctttaactgacataagagcgcgaagataaagttcctttaccgtcataaggtttgttt 327
Query: 205 ttaccatggctgattgcattgattcatagttatgacaacattcaatttctttatttcttt 264
|||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||
Sbjct: 328 ttaccatggctgattgcatttattcatatttattacaacattcaatttctttatttcttt 387
Query: 265 cgaactctgttcggaacatcttcaatgaggttaagtatatgctctgattagtgatatgat 324
| |||||| ||| |||||||||||| | |||| ||||| |||| |||| | |||| ||
Sbjct: 388 ctaactcttttcttaacatcttcaattattttaattatattctcttattatttatattat 447
Query: 325 catggtttattacaacaagagactttctt 353
|| ||||||||||||| | ||||||||
Sbjct: 448 caatttttattacaacaatatactttctt 476
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7913
Number of Sequences: 1807
Number of extensions: 7913
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)