BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG04RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig995 511 e-145
>3x_Contig995
Length = 2553
Score = 511 bits (258), Expect = e-145
Identities = 409/453 (90%), Gaps = 5/453 (1%)
Strand = Plus / Minus
Query: 458 taaatccttggcttaagatgtactcatggaataattgtactcgttttccagatacaggga 517
||||||||| ||||| || |||||| ||||||||||||| ||||||| |||||||||
Sbjct: 2424 taaatccttttcttaatattaactcatttaataattgtactctttttccatatacaggga 2365
Query: 518 atctattgtagaattctcttgaatctgatttcaactccgaaatgaagcttgatttagtaa 577
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 atctattttataattctctttaatctgatttcaactccgaaatgaagcttgatttagtaa 2305
Query: 578 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 2245
Query: 638 tattgcgagcgaccatagtcataccatttgaagtctcgattactgatttgntattattgg 697
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 2244 tattgcgagcgaccatagtcataccattgaaagtctcgattactgatttgttattattgt 2185
Query: 698 attagaagttctttttcataccagcagacaatccaaattgagactngtttgggtttcgtc 757
|| |||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||
Sbjct: 2184 ataagaagttcttttcgataccagcagacaatccaaattgagact-gtttgtg-ttcgtc 2127
Query: 758 agattcaccgatgaaggggttgcttggattaatccaagttaggtgttggtagcattaact 817
||||||||||||||| |||||||||| || | |||||| || |||| | |||||| ||||
Sbjct: 2126 agattcaccgatgaa-gggttgcttgaataagtccaag-taagtgtggttagcataaact 2069
Query: 818 gccgctttt-cagaccgattcttggggaaatgcaacgctaattttgcttccaattatctt 876
||||||||| ||||| |||||||||| || ||||||||||||||||| | | | |||||
Sbjct: 2068 gccgcttttacagacggattcttgggaaatggcaacgctaattttgctccaagtaatctt 2009
Query: 877 tcattcagtttcccgtgaaatggaatgtaattg 909
|||| ||||||||||| |||||| ||||||||
Sbjct: 2008 tcatccagtttcccgttgaatggagtgtaattg 1976
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6288
Number of Sequences: 1807
Number of extensions: 6288
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)