BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG06FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 1130 0.0
>3x_Contig1710
Length = 16151
Score = 1130 bits (570), Expect = 0.0
Identities = 659/678 (97%), Gaps = 8/678 (1%)
Strand = Plus / Plus
Query: 87 tataactatcacgacggaaacccttctagcagctatcagtttgcagcggatcacgggcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7119 tataactatcacgacggaaacccttctagcagctatcagtttgcagcggatcacgggcat 7178
Query: 147 gtttctgttcatcccaccttctatcccgtcgcaccattatagtgtggatattttggattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7179 gtttctgttcatcccaccttctatcccgtcgcaccattatagtgtggatattttggattt 7238
Query: 207 cgaaaattctgaaaactgaaattctcaagaaataaaaggaaaaaggttagatgggagaac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239 cgaaaattctgaaaactgaaattctcaagaaataaaaggaaaaaggttagatgggagaac 7298
Query: 267 atttatctgtaaataacatcgattagattgcacaagagaaaaaaaaatgattgtgattcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 atttatctgtaaataacatcgattagattgcacaagagaaaaaaaaatgattgtgattcg 7358
Query: 327 ctagtgcatttgacgatactattggaacactgattacacctgttggtaattgatctcgct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7359 ctagtgcatttgacgatactattggaacactgattacacctgttggtaattgatctcgct 7418
Query: 387 tgaaagaagaagattgaaataatacatcaagccttttcctccttcatttagaactgagat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7419 tgaaagaagaagattgaaataatacatcaagccttttcctccttcatttagaactgagat 7478
Query: 447 atcaatatttattaaggttacatttcactacgaattggacacaggaattgactgtaccag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7479 atcaatatttattaaggttacatttcactacgaattggacacaggaattgactgtaccag 7538
Query: 507 aagatataatcggcttacatttgatattcatttgtattaaccaagttacgggaacgaatc 566
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7539 aagataaaatcggcttacatttgatattcaattgtattaaccaagttacgggaacgaatc 7598
Query: 567 aatggtttgtgtac-tatattaagaatag-actaggataaatgtctgcattactttctag 624
||| |||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct: 7599 aattgtttgtgtacatatattaagaaaagaactaggaaaaatgtctgcattactttctag 7658
Query: 625 agttgctccaagattgagcgtcttggcttgtgctgccagac-tcaattgagaacgtatgc 683
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7659 agttgctccaagaatgagcgtcttggcttgtgctgccagacttcaattgagaacgtatgc 7718
Query: 684 ttctta-ccaacataca-catcatttgtttgccagctttggtct-ctaccatgtttcaa- 739
|||||| ||| |||||| ||||||| || |||||||||| |||| |||||||| |||||
Sbjct: 7719 ttcttacccaccatacaccatcattggtatgccagcttt-gtctcctaccatggttcaag 7777
Query: 740 gtggtttgaccgaatgga 757
|||||||||| |||||||
Sbjct: 7778 gtggtttgacggaatgga 7795
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7517
Number of Sequences: 1807
Number of extensions: 7517
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)