BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZG06RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1591                                                        1211   0.0  

>3x_Contig1591 
          Length = 14045

 Score = 1211 bits (611), Expect = 0.0
 Identities = 725/752 (96%), Gaps = 9/752 (1%)
 Strand = Plus / Plus

                                                                        
Query: 43   cttgagcctattatcctaactgtcattttattaacttgggattgtatctatacaatgaac 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  cttgagcctattatcctaactgtcattttattaacttgggattgtatctatacaatgaac 729

                                                                        
Query: 103  tcccaatggaggtcccatttgaaaggtatcactgaacttttcaagaagatcaattcagga 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  tcccaatggaggtcccatttgaaaggtatcactgaacttttcaagaagatcaattcagga 789

                                                                        
Query: 163  aactcatcaaaagtgctaaatgtcgcgaaatgttggtttaaggttatggagacttttgca 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  aactcatcaaaagtgctaaatgtcgcgaaatgttggtttaaggttatggagacttttgca 849

                                                                        
Query: 223  agtattattaccgtgctaggtggtgcacttgttgaggaaacagacttggacgcgattttt 282
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  agtattagtaccgtgctaggtggtgcacttgttgaggaaacagacttggacgcgattttt 909

                                                                        
Query: 283  gatccatacgatttcca-gtatgtcgagtcgttgaagtctctaaatatcacaacctcgtt 341
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  gatccatacgatttccatgtatgtcgagtcgttgaagtctctaaatatcacaacctcgtt 969

                                                                        
Query: 342  gaatgagttcaatcttttacggggtcacaacgaagagtttgatcttgttatcaaagaggt 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  gaatgagttcaatcttttacggggtcacaacgaagagtttgatcttgttatcaaagaggt 1029

                                                                        
Query: 402  cttcaaaagtttgaacttgattaggtctttggagaagacaagcatggacgggaataaagg 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 cttcaaaagtttgaacttgattaggtctttggagaagacaagcatggacgggaataaagg 1089

                                                                        
Query: 462  tggaatgatcaataaaaacatagactatttactcttctttgactctcactctgaagccta 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 tggaatgatcaataaaaacatagactatttactcttctttgactctcactctgaagccta 1149

                                                                        
Query: 522  tatgaacaagctctcttatttcaagatacagatnatcatcgtggaaatttgat-agcagc 580
            ||||||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||
Sbjct: 1150 tatgaacaagctctcttatttcaagatacagaaaatcatcgtggaaa-ttgataagcagc 1208

                                                                        
Query: 581  tttgatatcaattcattgacannattccgtgt-atacctgcangatatcaatcacattcc 639
            ||  |||||||||||||||||  || | |||| |||||||||    |||||||||| |||
Sbjct: 1209 ttgaatatcaattcattgaca-aatccggtgtaatacctgcagataatcaatcaca-tcc 1266

                                                                        
Query: 640  ttct-acagcaaaatactagatcatgcaataggatcttgttactctaaaaaatggagatg 698
            |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1267 ttctaacagcaaaatactagatcatgcaata-gatcttgttactctaaaaaatggagatg 1325

                                                                        
Query: 699  tctttgcgataagctggtatgatatttctcatcaaactc-agttcaatctttcttattga 757
            || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1326 tcattgcgataagctggtatgatatttctcatcaaactcaagttctatctttcttattga 1385

                                            
Query: 758  atgttttactaaaaccaccgggtattccaaaa 789
             |||||||||||||| ||  ||||||||||||
Sbjct: 1386 ttgttttactaaaactacttggtattccaaaa 1417


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7221
Number of Sequences: 1807
Number of extensions: 7221
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)