BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG07FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig428 773 0.0
3x_Contig1196 214 2e-55
>3x_Contig428
Length = 1780
Score = 773 bits (390), Expect = 0.0
Identities = 402/406 (99%)
Strand = Plus / Plus
Query: 87 ctattgattcaatattaccgacagccttaagctcgtttaagtctgcagctgcaattgaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 ctattgattcaatattaccgacagccttaagctcgtttaagtctgcagctgcaattgaat 1433
Query: 147 catccatcgccgattatgaacttcccgatgttgttaattcttcggaaacagtaactatga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 catccatcgccgattatgaacttcccgatgttgttaattcttcggaaacagtaactatga 1493
Query: 207 attcgctttcctgatccgctgttttggtaatggaggaagaaatagtagtgctggatgaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 attcgctttcctgatccgctgttttggtaatggaggaagaaatagtagtgctggatgaga 1553
Query: 267 agctcgatttagcttctgtatccttttcggcagatgaaatgtctgattcttcgagttctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 agctcgatttagcttctgtatccttttcggcagatgaaatgtctgattcttcgagttctg 1613
Query: 327 ttttatcagtggctacagacagttcaatttctgtcacaacgactgtagatgtgacaagtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 ttttatcagtggctacagacagttcaatttctgtcacaacgactgtagatgtgacaagtt 1673
Query: 387 ctacgtcaaggttagactttatttgatcgatatgcgtagcggtatcttcttccgcttgta 446
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 1674 ctacgtcaaggttagactttatttgatcgatatgcgtcgggttatcttcttccgcttgta 1733
Query: 447 atgaggtacctggataatgatcttctgattggacttcatgagcgac 492
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1734 atgaggtacctggataatgatcttctgattggacctcatgagcgac 1779
>3x_Contig1196
Length = 5660
Score = 214 bits (108), Expect = 2e-55
Identities = 174/192 (90%), Gaps = 3/192 (1%)
Strand = Plus / Plus
Query: 661 tgtattcgatgtctcttctatcaattcggattaagaggaaacgttgtcaatatcatcatc 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgtattcgatgtctcttctatcaattcggataaagaggaaacgttgtcaatatcatcatc 73
Query: 721 agagaattcgcttaatgagatggattgctcgac-gaagatgtaacttctgttggatcact 779
|||||||||||| |||||||||||| ||||| ||||||||| ||||||||| ||||||
Sbjct: 74 agagaattcgctaaatgagatggatgcttcgacagaagatgtagcttctgttgtatcact 133
Query: 780 caccattagtagttctggaaatagttccgggcggcttttcataatcttggtcaataggca 839
||||||||||||||||| | || ||| | | | ||||||||| |||||| |||||| |||
Sbjct: 134 caccattagtagttctgaagat-gtttctgtctgcttttcatcatcttgttcaata-gca 191
Query: 840 ttagactcttca 851
||||||||||||
Sbjct: 192 ttagactcttca 203
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6053
Number of Sequences: 1807
Number of extensions: 6053
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 2
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)