BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG07RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1527 1241 0.0
>3x_Contig1527
Length = 8131
Score = 1241 bits (626), Expect = 0.0
Identities = 733/756 (96%), Gaps = 11/756 (1%)
Strand = Plus / Minus
Query: 38 cacaaccttctgggttatcaatagcacaagcaataaccttggagttgaaaatatcgaact 97
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6162 cacaagcttctgggttatcaatagcacaagcaataaccttggagttgaaaatatcgaact 6103
Query: 98 cactagcgtcggttggggcttgtttaacatcctcggcatcctttgctgactcggcaggag 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6102 cactagcgtcggttggggcttgtttaacatcctcggcatcctttgctgactcggcaggag 6043
Query: 158 taactggagtgactggttgagtgtcatcaatttttagggatgctacgctgtttacgatag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042 taactggagtgactggttgagtgtcatcaatttttagggatgctacgctgtttacgatag 5983
Query: 218 attcttcactagatggagctggagaaacttctttgaaagcctccacagccggtgtcacac 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5982 attcttcactagatggagctggagaaacttctttgaaagcctccacagccggtgtcacac 5923
Query: 278 tttggtcattgacactggctttatgaggaatgtaaactgggcggttaagtttagaaagat 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5922 tttggtcattgacactggctttatgaggaatgtaaactgggcggttaagtttagaaagat 5863
Query: 338 caacaacactattagcagcttgttctgcaacagacttatcgattagtaaattgaattgca 397
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5862 caacaacactattagcagcttgttctgcaacagacttatcga-tagtaaattgaattgca 5804
Query: 398 gcagatgcagcttgtgttcttaggtagtacataccagtcttcaaaccctttttccatccg 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5803 gcagatgcagcttgtgttcttaggtagtacataccagtcttcaaaccctttttccatccg 5744
Query: 458 tagaaatgcatggaagttaacttacccatggttggtgcacgaatatggatatttaaggat 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5743 tagaaatgcatggaagttaacttacccatggttggtgcacgaatatggatatttaaggat 5684
Query: 518 tgagattgatcaatgtaagcagcacggtcggccgccatgtcgataatatgcttttgagac 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5683 tgagattgatcaatgtaagcagcacggtcggccgccatgtcgataatatgcttttgagac 5624
Query: 578 aattcccaaacagtcttgtataggtccctcaattcttgtgggatatttggtaagttctga 637
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5623 aattcccaaacagtcttgtataggtccttcaattcttgtgggatatttggtaagttctga 5564
Query: 638 atggggaccattgtc-gca--tatatgagatttcatagcttcattcc-aatacccaagtc 693
|| || ||||||||| ||| |||||||||||||||||||||| || ||||||||||||
Sbjct: 5563 at-ggaaccattgtcggcaataatatgagatttcatagcttcatcccaaatacccaagtc 5505
Query: 694 -accaagtcatgccaatagtatgggttgacatttttggnactcaccagac-atacacgac 751
|||||||||||| | |||||||||||||| ||||| ||||||||||| | |||||||
Sbjct: 5504 aaccaagtcatgcaataagtatgggttgaca-atttggaactcaccagacaaaacacgac 5446
Query: 752 gagagtacatgttgggatgttgtatgggtcaaaaca 787
||||||||||||| ||||| ||||||| ||||||||
Sbjct: 5445 gagagtacatgtt-ggatg-tgtatggttcaaaaca 5412
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5726
Number of Sequences: 1807
Number of extensions: 5726
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)