BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG08FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1345 1215 0.0
>3x_Contig1345
Length = 7291
Score = 1215 bits (613), Expect = 0.0
Identities = 676/689 (98%), Gaps = 6/689 (0%)
Strand = Plus / Minus
Query: 86 ttttgactgtttttcagcttctttttgaagtttttcctcattgattttcatgatttcatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268 ttttgactgtttttcagcttctttttgaagtttttcctcattgattttcatgatttcatc 2209
Query: 146 tttctctttatcagtcaaaaatttgacaagagatgcttgaccttgtctgtcatctactgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2208 tttctctttatcagtcaaaaatttgacaagagatgcttgaccttgtctgtcatctactgc 2149
Query: 206 aacatttagtgcgactaattcttcatctctaagtctatccgtagcttgtaaaaactgcga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2148 aacatttagtgcgactaattcttcatctctaagtctatccgtagcttgtaaaaactgcga 2089
Query: 266 tgaaggtgctttattcattgccaattgacgaacttcatctctgaaataagagaggcatct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2088 tgaaggtgctttattcattgccaattgacgaacttcatctctgaaataagagaggcatct 2029
Query: 326 gacataaggtagagcgatgtcttcctttgaaacgtcgggggaagaatcagaagatgaatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2028 gacataaggtagagcgatgtcttcctttgaaacgtcgggggaagaatcagaagatgaatc 1969
Query: 386 gtccaaccaacctaagccatcagaacgtaattgaaatccgatgacaccgagaatcttact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1968 gtccaaccaacctaagccatcagaacgtaattgaaatccgatgacaccgagaatcttact 1909
Query: 446 tatatatctggtaattgccaatagcggttcaatttttagttcagagctaatgttcgcaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1908 tatatatctggtaattgccaatagcggttcaatttttagttcagagctaatgttcgcaat 1849
Query: 506 gtaactgttagatttagtcaaaagttcattaagatgtttcaatacctgtggtgtagatag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1848 gtaactgttagatttagtcaaaagttcattaagatgtttcaatacctgtggtgtagatag 1789
Query: 566 gttatcacaaaaggaagcatgaactttttcctgagttgatttcaaaacgttgagtaaagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1788 gttatcacaaaaggaagcatgaactttttcctgagttgatttcaaaacgttgagtaaagc 1729
Query: 626 cctctcttcatttgacatttttttgctaacaatctttcctaaacccaagaaatgc-tgta 684
| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1728 cttctcttcatttgacaattttttgctaacaatctttcctaaacccaaggaatgcttgta 1669
Query: 685 gtcatt-ttcaaagcccttatttttttgaagaaatt-gtaaatg-agattcaagaaattt 741
|||||| |||||||||||||| |||||||||||||| ||||||| |||||||||| ||||
Sbjct: 1668 gtcattattcaaagcccttatatttttgaagaaattagtaaatgaagattcaagagattt 1609
Query: 742 -acttcgttt-ataacaattccttgaaat 768
||||||||| ||||| | ||||||||||
Sbjct: 1608 cacttcgtttaataacgaatccttgaaat 1580
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8579
Number of Sequences: 1807
Number of extensions: 8579
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)