BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG08RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1041 599 e-171
3x_Contig1132 507 e-143
>3x_Contig1041
Length = 5356
Score = 599 bits (302), Expect = e-171
Identities = 329/338 (97%)
Strand = Plus / Plus
Query: 43 gcttattagaccatttttcacgagtatatggagatccaaatggcttcaagttcagacatg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 gcttattagaccatttttcacgagtatatggagatccaaatggcttcaagttcagacatg 4952
Query: 103 cacaagataattttgcttctagtttagccgcgtactccatcatctgctatttgctacgaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4953 cacaagataattttgcttctagtttagccgcgtactccatcatctgctatttgctacgaa 5012
Query: 163 ttaaggatagacacaacggtaacatcatgatagataatgagggacatgttgttcacatcg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5013 ttaaggatagacacaacggtaacatcatgatagataatgagggacatgttgttcacatcg 5072
Query: 223 attttggcttcatgttatctaattctcctggctctgtgggatttgaagctgctccgttta 282
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5073 attttggcttcatgttatctaattaacctggctctgtgggatttgaagctgctccgttta 5132
Query: 283 aactcacatatgagtacgttgaagttatgggaggatcagaaagtgaaactttcaagaaat 342
||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 5133 aactcacatatgagtacgttgaagttatgggcggctcagacagtgacactttcaagaaat 5192
Query: 343 ttgttgaactgtgcaaggctgcgtttaaagcgctaaga 380
|||| ||| |||||||||||| ||||||||||||||||
Sbjct: 5193 ttgtagaaatgtgcaaggctgagtttaaagcgctaaga 5230
>3x_Contig1132
Length = 4143
Score = 507 bits (256), Expect = e-143
Identities = 326/341 (95%), Gaps = 7/341 (2%)
Strand = Plus / Plus
Query: 479 tcaaagattccatcttgaactttctgacgaagaatgcgatgaatttgtggagaatgtgct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaagattccatcttgaactttctgacgaagaatgcgatgaatttgtggagaatgtgct 60
Query: 539 aatttcaaaatctctaggtagtagatacacgangctatatgatcactttcaattactcac 598
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 aatttcaaaatctcttggtagtagatacacgaggctatatgatcactttcaattactcac 120
Query: 599 gcagggcatctatagttgagatcaaccaatagtaactaataccaaaatatata-cacctt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 gcagggcatctatagttgagatcaaccaatagtaactaataccaaaatatataccacctt 180
Query: 658 actcaaaagatcaatccannacatacctca-gtaatcatagatatacttgcccttgttgc 716
|||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||
Sbjct: 181 actcaaaagatcaatccaaaacatacctcaggtaatcatagatatacttg-ccttgttgc 239
Query: 717 aatgtttacttaccatggagaaataatttcacttattacat-atccatcaagata-tgtt 774
|||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||
Sbjct: 240 aatgttaccttaccatggagaaatagtttcactaattacataatccatcaagatattgtt 299
Query: 775 tgatggatagca-ttctatgtggtgtacca-tatcgaaagt 813
|||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 300 tgatggatagcatttctatgtggtgtaccagtatcgaaagt 340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6615
Number of Sequences: 1807
Number of extensions: 6615
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)