BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG09RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1172 0.0
>3x_Contig1686
Length = 15382
Score = 1172 bits (591), Expect = 0.0
Identities = 776/823 (94%), Gaps = 12/823 (1%)
Strand = Plus / Minus
Query: 43 cttcgaccaa-gtaaccttaattttcttggagatttcagggatccatttagacaaatctt 101
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 13544 cttcgaccaaagtaaccttaatttccttggagatttcagggatccatttagacaaatctt 13485
Query: 102 ggtcaacgtaatcttgcaattcagcagcaaatt-aacaccggttggaccaccaccaacaa 160
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13484 ggtcaacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaa 13425
Query: 161 caacgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcattttttt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13424 caacgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagcctttt 13365
Query: 221 caatgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaagg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13364 caatgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaagg 13305
Query: 281 aggcgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13304 aggcgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacga 13245
Query: 341 ccaaataatcatagttcaaatcaagttcgtagtcatggtcctttagtagcagattttatt 400
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13244 ccaaataatcatagttcaaatcaagttcgtagtcatggtc-tttagtagcagattttatt 13186
Query: 401 ctaacggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13185 ctaacggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttca 13126
Query: 461 ccaggtgaagatctggtgatggatctgacaggttcgacattggacttcaactcaacggtg 520
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13125 ccaggtgaagatctggtgatggatctgacaggttcgacaatggacttcaactcaacggtg 13066
Query: 521 ccgactggagtagaatgtagcaatggagtgaacaagatgtagtttcttggagaaacaaca 580
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 13065 ccgactggagtagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaaca 13006
Query: 581 nntacgttatacaaagaagtatcccaatgtttcaataatgacacagtatcccaaccagtt 640
||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||
Sbjct: 13005 ataacgttatacaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagta 12946
Query: 641 accataacgacaagggttttccntggaggatcgttagcgatagtggcagcttgaggattt 700
||| ||||||||||||||||| ||||| | ||||||||| |||||||||||||||| ||
Sbjct: 12945 cccaaaacgacaagggttttccttggagaaccgttagcgaaagtggcagcttgaggaatt 12886
Query: 701 tgangaagtggattaacttccctgttc-attcatagggaacgtaa-cagttccagccaac 758
||| || |||||||| ||||||||| | ||||||||| ||||||| |||| |||||||||
Sbjct: 12885 tgaggaggtggattagcttccctgtacaattcataggaaacgtaaccagtaccagccaac 12826
Query: 759 aaagccg-ttgaggaactttcaaag-ggtagaaaacactctt-ttgctaacga-agcttt 814
||||||| | ||| ||||||||||| |||||||| ||||||| |||||| ||| |||||
Sbjct: 12825 aaagccgctagagaaactttcaaagtggtagaaaccactcttcttgctagcgatggcttt 12766
Query: 815 acgggga-aacagcttttt-gcccatatta-aaattgattttg 854
|| |||| ||||||||||| ||| |||||| ||||||||||||
Sbjct: 12765 actgggacaacagctttttggccaatattagaaattgattttg 12723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6745
Number of Sequences: 1807
Number of extensions: 6745
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)