BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG10FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig904 1086 0.0
>3x_Contig904
Length = 3319
Score = 1086 bits (548), Expect = 0.0
Identities = 643/671 (95%), Gaps = 4/671 (0%)
Strand = Plus / Minus
Query: 88 ctattgggaaagatgtaataccatacgctgagataactgagtccttcagcatttgaaacg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2454 ctattgggaaagatgtaataccatacgctgagataactgagtccttcagcatttgaaacg 2395
Query: 148 tcctaacttaacagcttcacaacttcaccttattgactccaaagttatatagccaaaact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 tcctaacttaacagcttcacaacttcaccttattgactccaaagttatatagccaaaact 2335
Query: 208 tagaacaggcagccaaaacgtctctattcagttttccaatttccaccttcccttttctcc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 tagaacaggcagccaaaacgtctctattcagttttccaatttccaccttcccttttctcc 2275
Query: 268 aaatcagattctactagtgaaaatgacacataacctaagatggtatactatggtgctttg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2274 aaatcagattctactagtgaaaatgacacataacctaagatggtatactatggtgctttg 2215
Query: 328 taggatgaatcgatacttcattgagcgtgagaaagaatactctaatgacatgggcagttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2214 taggatgaatcgatacttcattgagcgtgagaaagaatactctaatgacatgggcagttt 2155
Query: 388 cgaagagggcatcgggaataggatagatagcagaacccatacctcacatgtacttgtagt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2154 cgaagagggcatcgggaataggatagatagcagaacccatacctcacatgtacttgtagt 2095
Query: 448 agggctacataacctttgctacaagaatatggccgttcactatcgcggtaagtcacgcta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2094 agggctacataacctttgctacaagaatatggccgttcactatcgcggtaagtcacgcta 2035
Query: 508 atgctcgggatttccagggaatttctgggaattcttgggttgagaatgctatcggggcga 567
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2034 atgctcgggattcccagggaattcctgggaattcttgggttgagaatgctatcggggcga 1975
Query: 568 aagaggataatatgcccaccaaaaagaccgcaagtttgtgagaatagatagagatggcct 627
||||||| || ||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 1974 aagaggaaaaaatgcccacc-aaaagaccgcaagttcgtgagaatagatagagatggctg 1916
Query: 628 gatttagagaagcagccattcaagtgttaaatagaagg-attagtaatgtgtggatttgg 686
||| ||||| ||||||||||||||||||||||||||| || || ||||||| ||| |
Sbjct: 1915 tattaagagaggcagccattcaagtgttaaatagaaggtttttgtcatgtgtgtatt--g 1858
Query: 687 tttggtgggggttgcattgaaacagcctaaaaagatgggggcctgcttgcaccaggatgg 746
||| || | ||||||||||||||||||||| |||| | |||||||||||| ||||||||
Sbjct: 1857 ttttgttgtggttgcattgaaacagcctaagaagaatgtggcctgcttgcaacaggatgg 1798
Query: 747 cctggaagtgg 757
| || ||||||
Sbjct: 1797 catgaaagtgg 1787
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5800
Number of Sequences: 1807
Number of extensions: 5800
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)