BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG11FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1404 1223 0.0
>3x_Contig1404
Length = 8096
Score = 1223 bits (617), Expect = 0.0
Identities = 711/737 (96%), Gaps = 4/737 (0%)
Strand = Plus / Minus
Query: 96 gacattgatctggctagagcgactagggaaaagaacaaatattcggaagaagttctagtc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5474 gacattgatctggctagagcgactagggaaaagaacaaatattcggaagaagttctagtc 5415
Query: 156 tgtaataaggatatttcaatacatttccgaacaattggaatcaattcgactggaaaagga 215
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5414 tgtaataaggatatttcaatac-tttccgaacaattggaatcaattcgactggaaaagga 5356
Query: 216 aagaattgaagaacaagttatcgaaaacaatgatagaaaagcagagttgaactctatcgt 275
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct: 5355 aagaattgaagaacaagtaatcgaaaacaatgaaagaaaagcagagttgaactctagcgt 5296
Query: 276 ggagaaattgaaacaagagcttctttctattgaaagagattccaatgagtttaaagcaaa 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5295 ggagaaattgaaacaagagcttctttctattgaaagagattccaatgagtttaaagcaaa 5236
Query: 336 agaattacagtactcagatagattagagaagttgcatgggctacaagagtatgttaaaaa 395
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5235 agaattagagtactcagatagattagagaagttgcatgggctacaagagtatgttaaaaa 5176
Query: 396 acagctgagaagttatgaaacctcactacaaagtcttaaaatcagagacgtttccaaact 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5175 acagctgagaagttatgaaacctcactacaaagtcttaaaatcagagacgtttccaaact 5116
Query: 456 tttaagtcaattgaatgacggaataattgattcatgcacagatgtaactgctaaggtaat 515
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5115 tttaagtcaattgaatgacggaataattgagtcatgcacagatgtaactgctaaggtaat 5056
Query: 516 gaatggtgacatagttcaaacgcagtctatcacagatgtcggatataatgacgctatgga 575
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5055 gaatggtgacatagttcaaacgcagtctatcacagatgtcggaaataatgacgctatgga 4996
Query: 576 agattctggtgaagctgcaacccacatcgggttaccaagtttgacggaaaccgagttgga 635
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4995 agattctggtgaagctgcaacccacagcgggttaccaagtttgacggaaaccgagttgga 4936
Query: 636 aaatctcgatttagatactctataacttgaactgcatcaattaccagactacttggataa 695
||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||
Sbjct: 4935 aaatctcgatttagaaactctagaacttgaacttcatcaattacaagactacttggataa 4876
Query: 696 ctgtaacggggatattgaagtactagaagaatacgcacgcaggctttgcag-ataccaac 754
|| |||||| ||||| ||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct: 4875 ctttaacggagatatagaagtactagaggaatacgcacgcaggc-ttgcagaataccaac 4817
Query: 755 gtcgaaaactagactt-aatcaagcatttgccaaaagggaagaagctagaaattagtgcg 813
|||||||||||||||| ||||||||| |||||||||||||||||| |||||| |||| |
Sbjct: 4816 gtcgaaaactagacttaaatcaagcagttgccaaaagggaagaagtaagaaataagtgtg 4757
Query: 814 aaaggtccaagaatgag 830
|||| | ||||||||||
Sbjct: 4756 aaagtttcaagaatgag 4740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7259
Number of Sequences: 1807
Number of extensions: 7259
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)