BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZG12FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 757 0.0
>3x_Contig1642
Length = 16641
Score = 757 bits (382), Expect = 0.0
Identities = 506/540 (93%), Gaps = 6/540 (1%)
Strand = Plus / Plus
Query: 88 ttacagttgcagttttcgtaggagtgaaacaggtttacctcaaacactaagttacaaact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7822 ttacagttgcagttttcgtaggagtgaaacaggtttacctcaaacactaagttacaaact 7881
Query: 148 tgatctcattgatgtcttatcataccagtggtaaagtgtggactgtaacggttttctttg 207
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7882 tgatctcattgatgtcttagcataccagtggtaaagtgtggactgtaacggttttctttg 7941
Query: 208 tcgatgcgtatatttatcagagttccctataaatagctgaggcgcttcactcacagaaaa 267
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7942 tcgatgcgtatatcgatcagagttccctagaaatagctgaggcgcttcactcacagaaaa 8001
Query: 268 tttcaaaccatttaaaccggtctctaggttcctatgtattaaatcgtttccctataacaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8002 tttcaaaccatttaaaccggtctctaggttcctatgtattaaatcgtttccctataacaa 8061
Query: 328 cggttttgatcgccgattaccacaacataaaacggcgcacattatctaagataaaaaaat 387
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 8062 cggttttgatcgccgattaccacaacaaaaaacggcgcacattatctaagaaaaaaaaat 8121
Query: 388 ttcgaggagcataccaagaaaaaagcacaggtacgaacagcaagaccaagaatttttttt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8122 ttcgaggagcataccaagaaaaaagcacaggtacgaacagcaagaccaagaatttttttt 8181
Query: 448 ttttgttttctggtgtcatatcctaacttgt-atgtctgatgcctncgcatttgttttag 506
|||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||| ||
Sbjct: 8182 ttttgttttctggtgtcatatcct-acttgtaatgcttgatgcctccgcatttgtttcag 8240
Query: 507 gcttgaatgcattattttattttgc-gttcttaccaacaatatgtaattttaagtttgcc 565
|||||||||||| | | | ||||| ||||| ||||||||||||| | | || || || |
Sbjct: 8241 gcttgaatgcatcaatatcatttgcggttctcaccaacaatatgtcaatataggtctggc 8300
Query: 566 ccttac-gacatcncgcgcaggttt-acctgaacgggaaat-gaattttttccaaaaaaa 622
|||||| ||||| ||||||||||| |||||| || ||| | |||| |||||||||||||
Sbjct: 8301 ccttacggacattccgcgcaggtttaacctgagcgtgaagtagaatattttccaaaaaaa 8360
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,677
Number of Sequences: 1807
Number of extensions: 16677
Number of successful extensions: 251
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)