BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH02FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1199 1245 0.0
>3x_Contig1199
Length = 6044
Score = 1245 bits (628), Expect = 0.0
Identities = 697/715 (97%), Gaps = 4/715 (0%)
Strand = Plus / Minus
Query: 89 atccatctaaccttcaactcttctcccttcacgttacccatacttgccaactttctcttg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atccatctaaccttcaactcttctcccttcacgttacccatacttgccaactttctcttg 680
Query: 149 aagacttccaatacaacaagctccaaagatcttttcaaatggcgagaacataaatcgact 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aagacttccaatacaacaagctccaaagatcttttcaaatggcgagaacataaatcgact 620
Query: 209 tcttccatcgtcatgtattcctgctttggattaccttccaaggaaacgttatcttccacg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcttccatcgtcatgtattcctgctttggattaccttccaaggaaacgttatcttccacg 560
Query: 269 acaagtttcactgggtcgtctgccaaagttttctccaatctctcgagatcttctttaatc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acaagtttcactgggtcgtctgccaaagttttctccaatctctcgagatcttctttaatc 500
Query: 329 tttaataaatgttggttatccggttcccttttccaaactctaccaccttccatttgatgg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttaataaatgttggttatccggttcccttttccaaactctaccaccttccatttgatgg 440
Query: 389 aacaccggataatgagtcctgtcaatctcatctcttctatagacatcggcagagattaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aacaccggataatgagtcctgtcaatctcatctcttctatagacatcggcagagattaaa 380
Query: 449 aatccaggcttatcagtcttacccacatggccaggaacaaacccattgatattcttgaaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatccaggcttatcagtcttacccacatggccaggaacaaacccattgatattcttgaaa 320
Query: 509 cattccaactcatgggcagatgtatgcgttcttaacagatgancatcgttcaagtaatag 568
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 cattccaactcatgggcagatgtatgcgttcttaacagatgacaatcgttcaagtaatag 260
Query: 569 gtatcagatttcgatctaccggggtgatcttctgggaatccc-aagaatcaaaattctca 627
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 259 gtatcagatttcgatctaccggggtgatcttctgggaatcccaaagaatcaaaattctca 200
Query: 628 tgtaccgtaaccgcaggtttgaaatcgttatagatctcgaatgaatgatgaagggtcg-t 686
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 199 tgtaccgtaaccgcaggtttgaaatcgttatagatctcgaatgagtgatg-agggtcgtt 141
Query: 687 caacctgtcctcgattacacttccttagatcccaacagggtgggatggtttcaaataaac 746
|| | |||||||||| ||||||| | |||||||||||||||| |||||||||||||||||
Sbjct: 140 cagcttgtcctcgataacacttcttaagatcccaacagggtgtgatggtttcaaataaac 81
Query: 747 gccgcgatcagtcaaattcaaaattgaactaattacatttcgccttatctgatac 801
|||||||||||||||||||||| |||||| ||||| |||| ||||||||||||
Sbjct: 80 agcgcgatcagtcaaattcaaaatcgaactagttaca-ttcgtcttatctgatac 27
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6156
Number of Sequences: 1807
Number of extensions: 6156
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)