BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH02RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1156 0.0
>3x_Contig1442
Length = 8270
Score = 1156 bits (583), Expect = 0.0
Identities = 695/723 (96%), Gaps = 7/723 (0%)
Strand = Plus / Minus
Query: 92 ctctttcaccactatgaagaaaaat-acataaaaaaaccgtgaacctgaacaggaacttt 150
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5202 ctctttcaccactatgaagaaaaatcacataaaaaaaccgtgaacctgaacaggaacttt 5143
Query: 151 caaaagtgcgttcttagtgaaaagaaaaaaacaccaaatgtatcttcactggctcctgaa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5142 caaaagtgcgttcttagtgaaaagaaaaaaacaccaaatgtatcttcactggctcctgaa 5083
Query: 211 caacaccttatatttcaaaacaataaagtcatctcatgaccatctattcgtaaaccaact 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5082 caacaccttatatttcaaaacaataaagtcatctcatgaccatctattcgtaaaccaact 5023
Query: 271 gctcttctcttacttttacgtatgttgagcctttccgatttctcaacatcccaacaaatt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5022 gctcttctcttacttttacgtatgttgagcctttccgatttctcaacatcccaacaaatt 4963
Query: 331 cgcaaaaaccatgcgatgctgaagagggaaatggtgttacccgaccattacgttatcatg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4962 cgcaaaaaccatgcgatgctgaagagggaaatggtgttacccgaccattacgttatcatg 4903
Query: 391 agtagacacgtgaccgtaaagatctttaggtgtcctcgctaaggtgatgatcggtatcac 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4902 agtagacacgtgaccgtaaagatctttaggtgtcctcgctaaggtgatgatcggtatcac 4843
Query: 451 ctggtgttcggtaccgctcagtggttgtatttggtgttgggatgatcgtatctccaaagc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4842 ctggtgttcggtaccgctcagtggttgtatttggtgttgggatgatcgtatctccaaagc 4783
Query: 511 ctgttgtggaaggagtagttggagggattgttgtagcttctgttgggttttgttgttgcg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4782 ctgttgtggaaggagtagttggagggattgttgtagcttctgttgggttttgttgttgcg 4723
Query: 571 gttgatgatgatggtggtgatgatgggtattctgatgttctggattcgtgtctgattcag 630
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4722 gttgatgatgatggtggtgatgatgggtattctgatgttctggatccgtgtctgattcag 4663
Query: 631 -agcgtctctggtaagcgtttgaactccggtactatttccagtggtgtttggttgatttt 689
||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct: 4662 aagcgtctctggtaggcgtttgaactcctgtactatttccagtggtgttt-gttgagttt 4604
Query: 690 gattcctggaacccattacctattaaattcccatgatttcagttgggcacattcttgacc 749
|||| || || ||| ||||||| |||||||||||||||||||| |||||| |||||| |
Sbjct: 4603 gatt-cttgacaccagtacctatgaaattcccatgatttcagtt-ggcacagtcttgagc 4546
Query: 750 atttttgtgggccctttacaccttttactttgggggaactgttttgggatgattttccca 809
| | || ||| | ||||||||| ||| || ||||||||||||| ||||||| ||||||
Sbjct: 4545 aatatt-tggtgcgcttacaccttctacatttggggaactgtttt-ggatgatcttccca 4488
Query: 810 ttt 812
|||
Sbjct: 4487 ttt 4485
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7639
Number of Sequences: 1807
Number of extensions: 7639
Number of successful extensions: 124
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)