BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH03FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1203 0.0
>3x_Contig1785
Length = 37935
Score = 1203 bits (607), Expect = 0.0
Identities = 666/679 (98%), Gaps = 5/679 (0%)
Strand = Plus / Minus
Query: 89 ttcaagctacaatgaacaaccaaaaaaaaactgtaactcaagtttaagcgtttgatatag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21519 ttcaagctacaatgaacaaccaaaaaaaaactgtaactcaagtttaagcgtttgatatag 21460
Query: 149 taatgtttttacttaaatatctctatcttataggttatcaagttcgaatgaatcgtcatc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21459 taatgtttttacttaaatatctctatcttataggttatcaagttcgaatgaatcgtcatc 21400
Query: 209 agtgttaggcacctttgtataaccagatttgttttttgctggtttgtccgcagtagaggg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21399 agtgttaggcacctttgtataaccagatttgttttttgctggtttgtccgcagtagaggg 21340
Query: 269 tgcctcgtcaatggataacttaaaatcatcgccctggttttctatgtcatctgcccatgc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21339 tgcctcgtcaatggataacttaaaatcatcgccctggttttctatgtcatctgcccatgc 21280
Query: 329 aacggatttgtttgatgaaggtggcctattttccggatctattagaatagcatgtatttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21279 aacggatttgtttgatgaaggtggcctattttccggatctattagaatagcatgtatttg 21220
Query: 389 ctttctgaaacgttcacgcaagatataatatgcaatggtaccggtaattgagaaaacgac 448
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 21219 ctttctgaaacgttcacgcaagaaataatatgcaatggtaccggtaattgagaaaacgac 21160
Query: 449 cagaagtatgacagcgatttcgaatttatcagagttccggtgtctatccttgtgcgagtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21159 cagaagtatgacagcgatttcgaatttatcagagttccggtgtctatccttgtgcgagtt 21100
Query: 509 ctcatcttcatcttgtttttgatcagctgacaattcctcttctcctgttgagtggtccga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21099 ctcatcttcatcttgtttttgatcagctgacaattcctcttctcctgttgagtggtccga 21040
Query: 569 gtgtacaacgaagtcttttgagataataacatc-tcttgattgtcttttccgactactaa 627
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21039 gtgtacaacgaagtcttttgagataataacatcatcttgattgtcttttccgactactaa 20980
Query: 628 ctctacat-ttttaaatagatgtccctaatacctctgctgataaaagcattatcgtaagg 686
|||||||| ||| |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 20979 ctctacatctttcaaatagatgtccataatacctctgctgattaaagcattatcgtaagg 20920
Query: 687 gaccatattgcgatgccttgtacaccggaaacatacgtcaaattacttttgtggcttaac 746
||||||| |||||||| ||||||| |||||||||||||||||||||||| || |||| ||
Sbjct: 20919 gaccata-tgcgatgcgttgtaca-cggaaacatacgtcaaattactttcgt-gcttcac 20863
Query: 747 aaaacctggagaaattgtg 765
|||||||| ||||||||||
Sbjct: 20862 aaaacctgcagaaattgtg 20844
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7557
Number of Sequences: 1807
Number of extensions: 7557
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)