BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZH03RM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1768                                                        1332   0.0  

>3x_Contig1768 
          Length = 25668

 Score = 1332 bits (672), Expect = 0.0
 Identities = 807/844 (95%), Gaps = 7/844 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   ctttagggaagacggtatacaattggccagtggtgccaatgataatacagttatgatatg 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 ctttagggaagacggtatacaattggccagtggtgccaatgataatacagttatgatatg 1245

                                                                        
Query: 109  ggatacaaggcaaaataatgatccaatatggactaaaagaaat-acaaagccgcagtcaa 167
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1246 ggatacaaggcaaaataatgatccaatatggactaaaagaaatcacaaagccgcagtcaa 1305

                                                                        
Query: 168  ggctattatttggcatccggaaattaccaatctattagccaccggcggtggtttactaga 227
            |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 1306 ggctattagttggcatccggaaattaccaatctattagccaccggcggtggttcattaga 1365

                                                                        
Query: 228  caagcatatacatttctggaatacaactactggtaataggctcggaactatagatacagg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 caagcatatacatttctggaatacaactactggtaataggctcggaactatagatacagg 1425

                                                                        
Query: 288  ctcacaagtgagctcgttgcactggggccaaagttactccaaacattcgggttgtatgga 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 ctcacaagtgagctcgttgcactggggccaaagttactccaaacattcgggttgtatgga 1485

                                                                        
Query: 348  tacagaaattgtagccacaggtggtacaccaaataactgcataaccatatacaattacga 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 tacagaaattgtagccacaggtggtacaccaaataactgcataaccatatacaattacga 1545

                                                                        
Query: 408  gacaaaattcaaagttgcggaaatacaacaagcgcatgattcacgtattgtttcatcgca 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 gacaaaattcaaagttgcggaaatacaacaagcgcatgattcacgtattgtttcatcgca 1605

                                                                        
Query: 468  attatcccctgatggcaccactatagcatctgttggaggagatgagaatctcaagttcta 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 attatcccctgatggcaccactatagcatctgttggaggagatgagaatctcaagttcta 1665

                                                                        
Query: 528  tcgagtcttcgaagatagacgcanaaggaaatacttggatgatagaactcataggtacac 587
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1666 tcgagtcttcgaagaaagacgcaaaaggaaatacttggatgatagaactcataggtacac 1725

                                                                        
Query: 588  agacaaattagacactaaatcgcatgataatgacgaacctcaaagatcaccatccaaagg 647
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1726 agacaaattagacactaaatcgcatgaaaatgacgaacctcaaagatcaccatccaaagg 1785

                                                                        
Query: 648  cacatacattattaggtagttttccagaataaaatgcatncgatataaactcttncttta 707
            ||||||||||||||||||||||||||| | ||||||||| |||||||||||||| |||| 
Sbjct: 1786 cacatacattattaggtagttttccaggaaaaaatgcattcgatataaactctttcttt- 1844

                                                                        
Query: 708  aataat-attatagnaatggagaaaagtatctctctgacagccaaatatatgggcactgg 766
            |||||| ||||||| ||| ||||||   |||||||||||||| ||  |||| |||||| |
Sbjct: 1845 aataataattatagtaat-gagaaagtaatctctctgacagcaaataatat-ggcacttg 1902

                                                                        
Query: 767  tccttctatgcagatcagatgaactcatctaaaagcttatttcc-gggaatgggagcaaa 825
            |||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct: 1903 tccttctatgcagatcagatgaactcatctaaaagcttatttccaggaaatgtgagcaaa 1962

                                                                        
Query: 826  tcccttttgaaggattaaagggag-aaaaaccaggctttcaaaggaaaaaggcgtcaaaa 884
            |||  || |||||| |||| |||| |||||||||||||||| || ||||  |||||| ||
Sbjct: 1963 tccacttagaaggaataaaaggagaaaaaaccaggctttcagagaaaaagtgcgtcagaa 2022

                
Query: 885  accg 888
            ||||
Sbjct: 2023 accg 2026


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5499
Number of Sequences: 1807
Number of extensions: 5499
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)