BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZH03RM1.SCF screened BAC_end (938 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1768 1332 0.0 >3x_Contig1768 Length = 25668 Score = 1332 bits (672), Expect = 0.0 Identities = 807/844 (95%), Gaps = 7/844 (0%) Strand = Plus / Plus Query: 49 ctttagggaagacggtatacaattggccagtggtgccaatgataatacagttatgatatg 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1186 ctttagggaagacggtatacaattggccagtggtgccaatgataatacagttatgatatg 1245 Query: 109 ggatacaaggcaaaataatgatccaatatggactaaaagaaat-acaaagccgcagtcaa 167 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1246 ggatacaaggcaaaataatgatccaatatggactaaaagaaatcacaaagccgcagtcaa 1305 Query: 168 ggctattatttggcatccggaaattaccaatctattagccaccggcggtggtttactaga 227 |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct: 1306 ggctattagttggcatccggaaattaccaatctattagccaccggcggtggttcattaga 1365 Query: 228 caagcatatacatttctggaatacaactactggtaataggctcggaactatagatacagg 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1366 caagcatatacatttctggaatacaactactggtaataggctcggaactatagatacagg 1425 Query: 288 ctcacaagtgagctcgttgcactggggccaaagttactccaaacattcgggttgtatgga 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1426 ctcacaagtgagctcgttgcactggggccaaagttactccaaacattcgggttgtatgga 1485 Query: 348 tacagaaattgtagccacaggtggtacaccaaataactgcataaccatatacaattacga 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1486 tacagaaattgtagccacaggtggtacaccaaataactgcataaccatatacaattacga 1545 Query: 408 gacaaaattcaaagttgcggaaatacaacaagcgcatgattcacgtattgtttcatcgca 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1546 gacaaaattcaaagttgcggaaatacaacaagcgcatgattcacgtattgtttcatcgca 1605 Query: 468 attatcccctgatggcaccactatagcatctgttggaggagatgagaatctcaagttcta 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1606 attatcccctgatggcaccactatagcatctgttggaggagatgagaatctcaagttcta 1665 Query: 528 tcgagtcttcgaagatagacgcanaaggaaatacttggatgatagaactcataggtacac 587 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1666 tcgagtcttcgaagaaagacgcaaaaggaaatacttggatgatagaactcataggtacac 1725 Query: 588 agacaaattagacactaaatcgcatgataatgacgaacctcaaagatcaccatccaaagg 647 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1726 agacaaattagacactaaatcgcatgaaaatgacgaacctcaaagatcaccatccaaagg 1785 Query: 648 cacatacattattaggtagttttccagaataaaatgcatncgatataaactcttncttta 707 ||||||||||||||||||||||||||| | ||||||||| |||||||||||||| |||| Sbjct: 1786 cacatacattattaggtagttttccaggaaaaaatgcattcgatataaactctttcttt- 1844 Query: 708 aataat-attatagnaatggagaaaagtatctctctgacagccaaatatatgggcactgg 766 |||||| ||||||| ||| |||||| |||||||||||||| || |||| |||||| | Sbjct: 1845 aataataattatagtaat-gagaaagtaatctctctgacagcaaataatat-ggcacttg 1902 Query: 767 tccttctatgcagatcagatgaactcatctaaaagcttatttcc-gggaatgggagcaaa 825 |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| Sbjct: 1903 tccttctatgcagatcagatgaactcatctaaaagcttatttccaggaaatgtgagcaaa 1962 Query: 826 tcccttttgaaggattaaagggag-aaaaaccaggctttcaaaggaaaaaggcgtcaaaa 884 ||| || |||||| |||| |||| |||||||||||||||| || |||| |||||| || Sbjct: 1963 tccacttagaaggaataaaaggagaaaaaaccaggctttcagagaaaaagtgcgtcagaa 2022 Query: 885 accg 888 |||| Sbjct: 2023 accg 2026 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5499 Number of Sequences: 1807 Number of extensions: 5499 Number of successful extensions: 34 Number of sequences better than 1.0e-20: 1 length of query: 938 length of database: 10,358,551 effective HSP length: 16 effective length of query: 922 effective length of database: 10,329,639 effective search space: 9523927158 effective search space used: 9523927158 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)