BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZH04FM1.SCF screened BAC_end
         (939 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1402                                                        1225   0.0  

>3x_Contig1402 
          Length = 8511

 Score = 1225 bits (618), Expect = 0.0
 Identities = 657/670 (98%)
 Strand = Plus / Minus

                                                                        
Query: 88   cccaagcccagaaaccagatattgaaggatttctctgagctgatcatatgcttgccggat 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3507 cccaagcccagaaaccagatattgaaggatttctctgagctgatcatatgcttgccggat 3448

                                                                        
Query: 148  gggttttgcatacagtaaatatgaaaaataggtacactttgagtatgctagatagacttt 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3447 gggttttgcatacagtaaatatgaaaaataggtacactttgagtatgctagatagacttt 3388

                                                                        
Query: 208  tcaacgttaattgatgtaatactaatacaaattggttcaaaagcactatagaccagcagt 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3387 tcaacgttaattgatgtaatactaatacaaattggttcaaaagcactatagaccagcagt 3328

                                                                        
Query: 268  caataacactaggtagaaaacatgctgtgttcgcaataacattgttgagaaattattgct 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3327 caataacactaggtagaaaacatgctgtgttcgcaataacattgttgagaaattattgct 3268

                                                                        
Query: 328  ggcaaacattcgttacaaacctatatttttcgaagagtcataggttcagtaatactgttc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3267 ggcaaacattcgttacaaacctatatttttcgaagagtcataggttcagtaatactgttc 3208

                                                                        
Query: 388  agaattttcattatattaaaactactcgtccctcagtcatgagatctcgtattacactat 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3207 agaattttcattatattaaaactactcgtccctcagtcatgagatctcgtattacactat 3148

                                                                        
Query: 448  aacgtattacgtatactgccccgattaataagtaaatttcttcatttaaatcttcaataa 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3147 aacgtattacgtatactgccccgattaataagtaaatttcttcatttaaatcttcaataa 3088

                                                                        
Query: 508  tcactgagtaacagtgttttccatcatcatcggtcgttaatttcgaatcaataccacttt 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3087 tcactgagtaacagtgttttccatcatcatcggtcgttaatttcgaatcaataccacttt 3028

                                                                        
Query: 568  cgtcaactaccccaccacaaactagtataaatacagttttattccaatcgggttcatcat 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3027 cgtcaactaccccaccacaaactagtataaatacagttttattccaatcgggttcatcaa 2968

                                                                        
Query: 628  tcatactgatggaaccctcaatatcgttaacgctttgcagttcttctggtaagtgcttaa 687
            |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||
Sbjct: 2967 tcatactgatggaaccctcagtatcgttaacggcttgcagttcttctggtaagtgcttaa 2908

                                                                        
Query: 688  gtactgcgttgttaaacagttttagttattattaagaatgctttatatggtacttaacct 747
            |||||||||||||||||||||||||| ||   | ||||||||| ||||||||||| ||||
Sbjct: 2907 gtactgcgttgttaaacagttttagtaatatgtcagaatgcttcatatggtacttcacct 2848

                      
Query: 748  tttttttgga 757
             || ||||||
Sbjct: 2847 cttctttgga 2838


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7099
Number of Sequences: 1807
Number of extensions: 7099
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)