BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH04RM1.SCF screened BAC_end
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 918 0.0
>3x_Contig1768
Length = 25668
Score = 918 bits (463), Expect = 0.0
Identities = 564/585 (96%), Gaps = 10/585 (1%)
Strand = Plus / Minus
Query: 40 gcttgtggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgt 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24682 gcttgtggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgt 24623
Query: 100 cttttgtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtgg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24622 cttttgtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtgg 24563
Query: 160 aattttcatcatcagattcactatcacttcccccaaaagcaggacgttttctctatcact 219
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 24562 aattttcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacact 24503
Query: 220 gtccccttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatcct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24502 gtccccttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatcct 24443
Query: 280 tttgcttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24442 tttgcttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtc 24383
Query: 340 tctcttccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24382 tctcttccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttt 24323
Query: 400 tccacttagcaagttttctcttgcctaatccgtagcttttccgtttgatccatancgctc 459
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 24322 tccacttagcaag-tttctcttgcctaatccgtagcttttccgtttgatccataacgctc 24264
Query: 460 accttcg-aatttaattgggnc-tttttcttctttctgggggctatctttcaagta-taa 516
||||||| |||||||||||| | ||||||||||||||| | ||||||||||||||| |||
Sbjct: 24263 accttcgtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaa 24204
Query: 517 tcctgaatgctttaaagg-tttggtaattc-atattataggtattttgattttg-aggaa 573
||||||||| ||| |||| |||| |||||| ||||||||||||||||||| ||| |||||
Sbjct: 24203 tcctgaatggttttaaggttttgttaattcaatattataggtattttgatattgaaggaa 24144
Query: 574 atcc-ttccaaa-gggtattttaaacttct-aatgaagatgggaa 615
|||| ||||||| |||||||||||||| || ||||||||||||||
Sbjct: 24143 atcctttccaaatgggtattttaaactactaaatgaagatgggaa 24099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,227
Number of Sequences: 1807
Number of extensions: 16227
Number of successful extensions: 424
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)