BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH05FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1792 1334 0.0
>3x_Contig1792
Length = 28468
Score = 1334 bits (673), Expect = 0.0
Identities = 760/780 (97%), Gaps = 7/780 (0%)
Strand = Plus / Minus
Query: 87 accgaattacaaccaaacactaaggaatcgtggtccagtcgagtctgggtatcccacaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14301 accgaattacaaccaaacactaaggaatcgtggtccagtcgagtctgggtatcccacaga 14242
Query: 147 aaggattcattccatagttgctgtgtgggaattgatgtctagagatatgagaagggcttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14241 aaggattcattccatagttgctgtgtgggaattgatgtctagagatatgagaagggcttc 14182
Query: 207 gcaacatttgaggttgattggcaaccatttacatgctagaaactaccacaacgttttggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14181 gcaacatttgaggttgattggcaaccatttacatgctagaaactaccacaacgttttggt 14122
Query: 267 tggaagcaaatactcatcgtcttttaaacagtacttgcagctgccaaacggtgaaattgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14121 tggaagcaaatactcatcgtcttttaaacagtacttgcagctgccaaacggtgaaattgg 14062
Query: 327 gtcctatttccacgatgtgccattagacttagatgttgatgccaaaacatgtaacatgat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14061 gtcctatttccacgatgtgccattagacttagatgttgatgccaaaacatgtaacatgat 14002
Query: 387 cgtagaggttccacgttggagtaatgggaagtttgaaatcagtaagaccgaaccatttaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14001 cgtagaggttccacgttggagtaatgggaagtttgaaatcagtaagaccgaaccatttaa 13942
Query: 447 ccccatcacacaggacataaagaaaggcaagccacgatttgtcaataacattttccctta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13941 ccccatcacacaggacataaagaaaggcaagccacgatttgtcaataacattttccctta 13882
Query: 507 ccatggatacattcataactatggggctatcccacagacatgggaacagccacttattga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13881 ccatggatacattcataactatggggctatcccacagacatgggaacagccacttattga 13822
Query: 567 agtattgcccggtttcaagggtgataatgacccattggactgttgtgatattgtttccag 626
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 13821 agtattgcccggtttcaagggtgataatgacccattggactgttgtgaaattggttccag 13762
Query: 627 catcgnccaaatgggagatatcaaaaaagtaaagcttctagggtcattagccctcattga 686
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13761 catcgccaaaatgggagatatcaaaaaagtaaagcttctagggtcattagccctcattga 13702
Query: 687 cgatggagaactcgatttggaagtcatttgtatcgacattgaagatccc-ttgctataaa 745
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 13701 cgatggagaactcgattggaaagtcatttgtatcgacattgaagatcccattgctataaa 13642
Query: 746 attgaacaattgggcagatgtagacactgttatgccctgttctttttggatgcaactaga 805
||||||||| | |||||||||||||||||||||| |||| || | |||||||||||||||
Sbjct: 13641 attgaacaagttggcagatgtagacactgttatg-cctggtc-tcttggatgcaactaga 13584
Query: 806 acatgggttcagagattacaaggattccggcttgggaaacaccccaatgtggtttgcatt 865
|||| |||||||||||||||| |||||| || ||||||||| || ||||| |||||||||
Sbjct: 13583 acat-ggttcagagattacaa-gattcctgc-tgggaaacaacctaatgt-gtttgcatt 13528
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5095
Number of Sequences: 1807
Number of extensions: 5095
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)