BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH05RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig819 1360 0.0
>3x_Contig819
Length = 3350
Score = 1360 bits (686), Expect = 0.0
Identities = 747/761 (98%), Gaps = 5/761 (0%)
Strand = Plus / Minus
Query: 50 tgcattatatttcaaatatattgacttgtctatggcaagttgtttcaactttgtgtctgt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgcattatatttcaaatatattgacttgtctatggcaagttgtttcaactttgtgtctgt 698
Query: 110 aattgagctaaaagcggtatccttgttagatccctctgcctctttggcatcgaaatcaag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aattgagctaaaagcggtatccttgttagatccctctgcctctttggcatcgaaatcaag 638
Query: 170 cacttcttgaaactgagtagatatggtattcgccatggacgaccagaatgattttttaga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cacttcttgaaactgagtagatatggtattcgccatggacgaccagaatgattttttaga 578
Query: 230 aacagtgttccagtacccttgcgtcaactcttcaactttctccaagttgtcatccaattt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aacagtgttccagtacccttgcgtcaactcttcaactttctccaagttgtcatccaattt 518
Query: 290 ccccaacatctcttgagccttatttgtaacggtaccgcccaaattctcagggatttggaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ccccaacatctcttgagccttatttgtaacggtaccgcccaaattctcagggatttggaa 458
Query: 350 attcaaagagtccttctctttaacaaaacctaaaatagcctttgaagttttctggagctg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attcaaagagtccttctctttaacaaaacctaaaatagcctttgaagttttctggagctg 398
Query: 410 ttcatccacttggtcctcgaacttctgaaacgcctcatcagtcttatcatcatgttttgt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttcatccacttggtcctcgaacttctgaaacgcctcatcagtcttatcatcatgttttgt 338
Query: 470 caccttaacggcatctgcagtctctgttgcagtctcttcatataagatatccatcgctaa 529
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 337 caccttaacggcatctgcagtctctgttgcagtctcttcatataagaaatccatcgctaa 278
Query: 530 agacgcttttcacgactaatgctaagctagctattaccaaagtaccttaatgtcaccaaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agacgcttttcacgactaatgctaagctagctattaccaaagtaccttaatgtcaccaaa 218
Query: 590 taacacgtctggctagatacgctcgacgcttatcgacagacttctcgcgagaactctttt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 taacacgtctggctagatacgctcgacgcttatcgacagacttctcgcgagaactctttt 158
Query: 650 gttgcgcctccccttcttgaagatcaatccttttaaaggtcaaaactcc-aatgtttcat 708
|||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct: 157 gttgcgcctccccttcttgaagatcaatcc-tttaaaggttcaaactccaaatgtttcat 99
Query: 709 gattttccctattattggnaccttttcattgcaaagaagatcagtttcaacatgtcttaa 768
|||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 98 gattttccttattattgg-accttttcattgcaaagaagaacagtttcaacatgtctaaa 40
Query: 769 atacagtagggatgaagcctnctcatccttgcctctgctca 809
|||||||| ||| ||||||| ||||| |||| |||||||||
Sbjct: 39 atacagta-ggaagaagcctcctcat-cttgtctctgctca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6427
Number of Sequences: 1807
Number of extensions: 6427
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)