BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH07FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1722 1411 0.0
>3x_Contig1722
Length = 17718
Score = 1411 bits (712), Expect = 0.0
Identities = 752/764 (98%), Gaps = 1/764 (0%)
Strand = Plus / Plus
Query: 82 tatcttggagttcaactgacttgtttcaaccattaatggtgtgcttcttcgataatagtc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tatcttggagttcaactgacttgtttcaaccattaatggtgtgcttcttcgataatagtc 477
Query: 142 atagttgtttaaattcaaggtcataacgaatataccactgtaggagctattgtcatttct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atagttgtttaaattcaaggtcataacgaatataccactgtaggagctattgtcatttct 537
Query: 202 atccttttaaaagaatatcgttaatataagagaaagaagataataattagtataaatggt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atccttttaaaagaatatcgttaatataagagaaagaagataataattagtataaatggt 597
Query: 262 cgctccaactgctttgaagaaaagtgacgtttctgagggcactgtgcctgttacaacaac 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cgctccaactgctttgaagaaaagtgacgtttctgagggcactgtgcctgttacaacaac 657
Query: 322 ttctcgtattgttggtgttgataacactgaaaagatcgatgaagacgatgatgatgctga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttctcgtattgttggtgttgataacactgaaaagatcgatgaagacgatgatgatgctga 717
Query: 382 tgtactaatagatcaggacggtgatgctatgcttgttgatgaggaaaataacgaggaatc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgtactaatagatcaggacggtgatgctatgcttgttgatgaggaaaataacgaggaatc 777
Query: 442 taacaagaagaaagaagacgcaggtgtagtgctagatgccgaagggaaaccaagattcac 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 taacaagaagaaagaagacgcaggtgtagtgctagatgccgaagggaaaccaagattcac 837
Query: 502 tagtgctgctagctctgctcaaaccaaagtgaaactagaaagcagaaaagtttctgtccc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tagtgctgctagctctgctcaaaccaaagtgaaactagaaagcagaaaagtttctgtccc 897
Query: 562 accacatagaatgacgcctcttaaaaacaactggtccaagatttacccaccattagtcga 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 accacatagaatgacgcctcttaaaaacaactggtccaagatttacccaccattagtcga 957
Query: 622 ccatttaaaactacaagttagaatgaactt-aagaccaagtctgtcgaattaagatacca 680
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 958 ccatttaaaactacaagttagaatgaacttaaagaccaagtctgtcgaattaagaaccca 1017
Query: 681 tccaaagcataccacagatccaagtgctctacagaaaggtgcagatttcatcaaagcatt 740
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1018 tccaaagcataccacagatccaggtgctctacagaaaggtgcagatttcatcaaagcatt 1077
Query: 741 tactttcggtttcgatttggatgacttcattgcttggttgagattagacgatttattttt 800
|||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| | |
Sbjct: 1078 tactctcggtttcgatttggatgactccattgctttgttgagattagacgatttatatat 1137
Query: 801 cgaaacatttgaaatcaaagacctttagactttgcaaggggacc 844
|||||||||||||||||||||| || ||||||||||||| ||||
Sbjct: 1138 cgaaacatttgaaatcaaagacgttaagactttgcaaggtgacc 1181
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7439
Number of Sequences: 1807
Number of extensions: 7439
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)