BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH07RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1280 835 0.0
3x_Contig974 450 e-126
>3x_Contig1280
Length = 5058
Score = 835 bits (421), Expect = 0.0
Identities = 438/441 (99%), Gaps = 2/441 (0%)
Strand = Plus / Minus
Query: 48 aacgagcttcggttagcggacggaaactcggatggaggtgacgaagaggagagtctcagc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aacgagcttcggttagcggacggaaactcggatggaggtgacgaagaggagagtctcagc 391
Query: 108 cccgacaccaagtctcaaagagaggaatcttcggagaatagtgaaaatgtatcaagaagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cccgacaccaagtctcaaagagaggaatcttcggagaatagtgaaaatgtatcaagaagc 331
Query: 168 acctccagaccacctctaaccagttccatcgtttcttctgttgaaagggaacagctcaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acctccagaccacctctaaccagttccatcgtttcttctgttgaaagggaacagctcaaa 271
Query: 228 tcacaagtgaaggtaaagatacgattacaaccaatcggggctatccctcaaatacaacct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcacaagtgaaggtaaagatacgattacaaccaatcggggctatccctcaaatacaacct 211
Query: 288 agagtatgccaaatctcagcgcaccaacaatttttagcacttactaggtttctgtgcaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 agagtatgccaaatctcagcgcaccaacaatttttagcacttactaggtttctgtgcaag 151
Query: 348 agattaaaacgaaagcatattcaattgctacatcaacaacgcattcgcgccatcattaga 407
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 150 agattaaaacgaaagcatattc-attgctacatcaacaac-cattcgcgccatcattaga 93
Query: 408 tcaaaacattggcgatctatggacccaattcaaagtcaacgacgaacttattgtcagcta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tcaaaacattggcgatctatggacccaattcaaagtcaacgacgaacttattgtcagcta 33
Query: 468 ctgcgaaacggtagcattcgg 488
|||||||||| ||||||||||
Sbjct: 32 ctgcgaaacgctagcattcgg 12
>3x_Contig974
Length = 4780
Score = 450 bits (227), Expect = e-126
Identities = 384/424 (90%), Gaps = 11/424 (2%)
Strand = Plus / Plus
Query: 473 aaacggtagcattcgggtagacactgaccggttcttatcacatatttatatgaataattg 532
|||| |||||| |||| ||||||| ||||| | ||||||| | |||||||||||||||
Sbjct: 229 aaaccgtagcaggcggggagacacttaccggggcgtatcacagagttatatgaataattg 288
Query: 533 ccaagccagtattgatcacgtgatatactttttctctctc--agtttgagacacanacaa 590
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 289 ccaagccagtattgatcacgtgatatactttttctctctctcagtttgagacacaaacaa 348
Query: 591 acaaacaaacattacaaggcagcgcatgtcatcaagggataccaaaacaaagacaggtga 650
||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 349 acaaacaaacaaaacaaggcagcgcaggtcatcaagggaaaccaaaacaaagacaggtga 408
Query: 651 agatcgtta-ccaactgacgttttgaactggtgacggacttgtttgtttgaagagagatc 709
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agatcgttacccaactgacgttttgaactggtgacggacttgtttgtttgaagagagatc 468
Query: 710 ttgagtacttttatagat-aacagataccctgga-aagttgctattatagagtagggttg 767
| |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct: 469 tgaggtacttttatagatcaacagata-cctggagaagttgctattatagagtagggttg 527
Query: 768 cttnggaagaaa-gaatacaattanggatggtgggacattaaacttgattgcagcaccat 826
||| | |||||| |||||||| || ||||||||| ||| |||||||||| ||||| ||
Sbjct: 528 ctt-gaaagaaaggaatacaaataaggatggtggaaca-taaacttgatgcaagcacgat 585
Query: 827 atcgaagatgatccctcagaatctttgatcagatgcggacgtcagaacgggtccaagaat 886
||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||
Sbjct: 586 atcgaagatgatccctcag-atctttgatcagatgc-gacgtcagactggctccaagaat 643
Query: 887 tttg 890
||||
Sbjct: 644 tttg 647
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5906
Number of Sequences: 1807
Number of extensions: 5906
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)