BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH08RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1417 0.0
>3x_Contig1742
Length = 17167
Score = 1417 bits (715), Expect = 0.0
Identities = 803/823 (97%), Gaps = 9/823 (1%)
Strand = Plus / Plus
Query: 62 ggataacccaaatatcacagagatgtacattcatggtataataggagcaggtttgactgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ggataacccaaatatcacagagatgtacattcatggtataataggagcaggtttgactgc 139
Query: 122 ggaagagctgataaacgaagataatcttgatgatgatttttctaatacgaatgaaaacgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ggaagagctgataaacgaagataatcttgatgatgatttttctaatacgaatgaaaacgg 199
Query: 182 tacaacacaggccattggcttcgataggttacgcagcgtgggttttttctaacaggagat 241
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 200 tacaacacaggccattggcttcgataggttacgcagcgtgggtttttccgaacaggagat 259
Query: 242 tgatttgctacgtcagcagtttctagccacttatggagatttagaaacaatgcctaacca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgatttgctacgtcagcagtttctagccacttatggagatttagaaacaatgcctaacca 319
Query: 302 gcagcagcgagatattagacagctagaagaacaatggatggagaccggagtcaacgatcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcagcagcgagatattagacagctagaagaacaatggatggagaccggagtcaacgatcc 379
Query: 362 acagggacagcaatttaacctccattggaatagctaattggaaaagcaacatggacctct 421
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acagggacagcaatttaa-ctccattggaatagctaattggaaaagcaacatggacctct 438
Query: 422 tgattggattaagtatagggtccttgttgggcgttttcagtctattactattaaaacagc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgattggattaagtatagggtccttgttgggcgttttcagtctattactattaaaacagc 498
Query: 482 agggtttattctcgcagcgccaaaagatgtcgatagtagcaggtctaatattcaacattg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agggtttattctcgcagcgccaaaagatgtcgatagtagcaggtctaatattcaacattg 558
Query: 542 cttggtggatacgttccttttagaattcagcatctggcctttttacatcagatgtgttta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttggtggatacgttccttttagaattcagcatctggcctttttacatcagatgtgttta 618
Query: 602 gaaaaaaattgaatatctcagcatcgagcatgtacatacgttatattatataaggcttga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaaaaaaattgaatatctcagcatcgagcatgtacatacgttatattatataaggcttga 678
Query: 662 atgatnattactttcgtgtttttcgtaaagcgaaatatactataataattcctcttcaga 721
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atgat-attactttcgtg-ttttcgtaaagcgaaatatactataataattcctcttcaga 736
Query: 722 tcagtgggacatgtnctctggtatcaaaaacaggaaatggnttcattcatgcttttgtga 781
|||||||||||||| ||||||||||||||||| | ||| | |||||||||||||||||||
Sbjct: 737 tcagtgggacatgtcctctggtatcaaaaacaaggaattggttcattcatgcttttgtga 796
Query: 782 atgccgatgattgccctgggaacacatatttacttaaggaaaatgctcgatgggcttatc 841
|||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct: 797 gtgccgatgattg-cctgggaacacatatttactta--ggaaatgctcgattggcttatc 853
Query: 842 aaaagccgtaaggtancataggaaacaacgggccaaaccaata 884
||||| ||||||||| |||||| |||||| |||||||||||||
Sbjct: 854 aaaag-cgtaaggtagcatagg-aacaac-ggccaaaccaata 893
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5999
Number of Sequences: 1807
Number of extensions: 5999
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)