BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZH09FM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1049                                                        1015   0.0  

>3x_Contig1049 
          Length = 4107

 Score = 1015 bits (512), Expect = 0.0
 Identities = 533/539 (98%), Gaps = 2/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 120 ttgggattgaaagggcacgctccgaacatatatataggatccttcttcacctttgccaat 179
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 17  ttgggattgaaagggcac--tccgaacatatatataggatccttcttcacctttgccaat 74

                                                                       
Query: 180 agtttttctctttgttttctcttctttaaattctcattggttgcttcatctttctcagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  agtttttctctttgttttctcttctttaaattctcattggttgcttcatctttctcagga 134

                                                                       
Query: 240 atgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttg 194

                                                                       
Query: 300 tcattaatggatatatacctgtttcctgtataagtttcgtcccagtaatccttaccatat 359
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tcattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatat 254

                                                                       
Query: 360 gatcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gatcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttct 314

                                                                       
Query: 420 tcaaaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaaaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatg 374

                                                                       
Query: 480 agttgatatatgtcatcctccgtcatcattggtttcctagcgtctattaatatccaaatc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agttgatatatgtcatcctccgtcatcattggtttcctagcgtctattaatatccaaatc 434

                                                                       
Query: 540 gtggcagtttcttctcatattacgtatattattcagtcataaacgttttataccaaactt 599
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 435 gtggcagtttcttctcatattacgtatattattcagtcataaacgttttaaaccaaactt 494

                                                                      
Query: 600 ttgaagttgtctgaaatatttgtaacttaatcatagtcaatgattgatattaacgaatt 658
           ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 495 ttgaagttgtctgaaatatttgtaacttaatcatagtcaatgatttatataaacgaatt 553


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8248
Number of Sequences: 1807
Number of extensions: 8248
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)