BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH09RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1057 0.0
>3x_Contig1791
Length = 39945
Score = 1057 bits (533), Expect = 0.0
Identities = 654/685 (95%), Gaps = 8/685 (1%)
Strand = Plus / Minus
Query: 44 gcttcaagagtttaacgtatatatcttgtctttcgttttgatatgagaccatttctattc 103
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 20131 gcttcaagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattc 20072
Query: 104 tttttattataccattgacatgatcgattaagtttgatctagtctttgttgataagggta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20071 tttttattataccattgacatgatcgattaagtttgatctagtctttgttgataagggta 20012
Query: 164 ccgtgtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattttgtt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 20011 ccgtgtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgtt 19952
Query: 224 catggttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19951 catggttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaa 19892
Query: 284 atgtattacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19891 atgtattacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaa 19832
Query: 344 tagagtttttccaggctaatgcctctgttctattncctaaacattatatcacgtttttgg 403
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 19831 tagagtttttccaggctaatgcctctgttctatt-cctaaacattatatcacgtttttgg 19773
Query: 404 ctttgattcacaatggataaaacattgnggtcagtattcttgttttccgttaagaatagg 463
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 19772 ctttgattcacaatggataaaacattggggtcagtattcttgttttccgttaagaatagg 19713
Query: 464 ttgttacaatattccatttcgtacagcgaagatagcggntgagat-aatcactaatgtaa 522
|||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||
Sbjct: 19712 ttgttacaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaa 19653
Query: 523 tgtgaagtcttagttaattcatctagtncgatctttggatccagcccggacatgctatca 582
| ||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 19652 tttgaggtcttagttaattcatctagttcgatctttggatccagccaggacatgctatca 19593
Query: 583 aag-aaaataggaaggaatgta-tcaatatcgcaaacttattctttcattgatccttta- 639
||| |||||||||||||| ||| ||||||||||||||||| |||| || |||| |||||
Sbjct: 19592 aagaaaaataggaaggaa-gtagtcaatatcgcaaacttagtcttccaatgattctttac 19534
Query: 640 cacattttctacaaaagag-acttttttgnactgactttcattttctatttcccccattt 698
||||||| |||||| |||| ||||| ||| ||||||||||| |||||||||||||||| |
Sbjct: 19533 cacatttcctacaagagagaactttcttgtactgactttca-tttctatttcccccatct 19475
Query: 699 taattactttcaaattccccgtttg 723
||| ||||||||||| |||| ||||
Sbjct: 19474 taagtactttcaaataccccttttg 19450
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,013
Number of Sequences: 1807
Number of extensions: 14013
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)