BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH10FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig696 946 0.0
>3x_Contig696
Length = 2788
Score = 946 bits (477), Expect = 0.0
Identities = 530/545 (97%), Gaps = 2/545 (0%)
Strand = Plus / Plus
Query: 87 aaaagatataatggtttttttcaatgaaacaatatagagaaacgaataacaaacagttta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 aaaagatataatggtttttttcaatgaaacaatatagagaaacgaataacaaacagttta 1465
Query: 147 agtgagagtgtgcacttcttgtcagtgaatcaatgacaaagaactacttttaacaataat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 agtgagagtgtgcacttcttgtcagtgaatcaatgacaaagaactacttttaacaataat 1525
Query: 207 cgagaatacattaaattaacctatgaatttataaaaatagagatataaaataaattttga 266
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1526 cgagaatacattaaattaacctatgaatttataaaaatagagatataaaatacattttga 1585
Query: 267 aaactaccattaagtctttatgcaaaatgtgtactttatcaaaagcgtgtgaagtgtgtg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 aaactaccattaagtctttatgcaaaatgtgtactttatcaaaagcgtgtgaagtgtgtg 1645
Query: 327 tgcgtgtgtgcgtgtgtgcgtgtacgtgcgtgtgcaaattttgtgtgcttgtgtgtaaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 tgcgtgtgtgcgtgtgtgcgtgtacgtgcgtgtgcaaattttgtgtgcttgtgtgtaaat 1705
Query: 387 taaaacagtccagccaaataatggggatgttagggaaaaaaaaatctgtgtgtgtagatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 taaaacagtccagccaaataatggggatgttagggaaaaaaaaatctgtgtgtgtagatt 1765
Query: 447 gtaaatttgttaaattgatgatggtaagtgtctttttagcttgaagctttttatagatgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1766 gtaaatttgttaaattgatgatggtaagtgtctttttagcttgaagcttttataagatgc 1825
Query: 507 ttcaataaatgcttcacctgttggtcgattgataaacaagttttaacttactcctaaaaa 566
|||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||| |||
Sbjct: 1826 ttcaataaatgcttcaactgtttgtcgattgataaacaag-tttcacttactcctagaaa 1884
Query: 567 aagacccaacagtttttgagataagaatgatgccaattgatcccaaaaaagggaagggtt 626
|||| |||||| | |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 1885 aagaaccaacaagtattgagaaaagaatgatgccaattgat-ccaaaaaagggaagggtt 1943
Query: 627 tttat 631
|||||
Sbjct: 1944 tttat 1948
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,064
Number of Sequences: 1807
Number of extensions: 19064
Number of successful extensions: 2303
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)