BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZH10RM1.SCF screened BAC_end
         (948 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig869                                                         1332   0.0  

>3x_Contig869 
          Length = 2873

 Score = 1332 bits (672), Expect = 0.0
 Identities = 705/716 (98%)
 Strand = Plus / Minus

                                                                        
Query: 45   gcttgcgtgtggagcgatttcccattcaactcggtgtgccgtgggtaccccgcgtaaata 104
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1859 gcttgcgtgtggagcgatttcccagtcaactcggtgtgccgtgggtaccccgcgtaaata 1800

                                                                        
Query: 105  agcccatagaccctgtttagacttatttacctatttgcattaatgatagatgatacaaga 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 agcccatagaccctgtttagacttatttacctatttgcattaatgatagatgatacaaga 1740

                                                                        
Query: 165  tactgtgagatatggattcatcacatactgaaggttttgaattggtatcactttattttg 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 1739 tactgtgagatatggattcatcacatactgaaggttttgaattggtatcacgtgatttgg 1680

                                                                        
Query: 225  atgtccagaatcaccaatgaggaaaaggaatattatgcaactccgtataaaggtttcaaa 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 atgtccagaatcaccaatgaggaaaaggaatattatgcaactccgtataaaggtttcaaa 1620

                                                                        
Query: 285  gctttcccgggttccaagacaaggcatcgtgtttatctagaagtagtgaagtcagagtac 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 gctttcccgggttccaagacaaggcatcgtgtttatctagaagtagtgaagtcagagtac 1560

                                                                        
Query: 345  tagtttgacagatggatctactgcttaattagacaaatgaaactagcggggctaggaaat 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 tagtttgacagatggatctactgcttaattagacaaatgaaactagcggggctaggaaat 1500

                                                                        
Query: 405  tttattccgaacaaggacagtaactggtccacagaaattctgtccggaatgggttaaacg 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 tttattccgaacaaggacagtaactggtccacagaaattctgtccggaatgggttaaacg 1440

                                                                        
Query: 465  aacatcatatagttcggaagatttttttaccactgcagtatttgaactattaacaaaata 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 aacatcatatagttcggaagatttttttaccactgcagtatttgaactattaacaaaata 1380

                                                                        
Query: 525  tggagagaagctatcagtcaaatcaaggaagatatggtttcatcagatccacggatatta 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 tggagagaagctatcagtcaaatcaaggaagatatggtttcatcagatccacggatatta 1320

                                                                        
Query: 585  tggaaagaaggggactaaaatgtaccgcatttcctttgatagaaagagatatcgtgagac 644
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1319 tggaaagaaggggactaaaatgtaccgcaattcctttgatagaaagagatatcgtgagac 1260

                                                                        
Query: 645  tgatctaatattgaattgtctagaacaaatgatagtagaaaacttagccacgggatttta 704
            ||||||||||||| |||||||||||||||||||||||||||  | |||||||| || |||
Sbjct: 1259 tgatctaatattggattgtctagaacaaatgatagtagaaacttaagccacggtatctta 1200

                                                                    
Query: 705  tatactaagaaatgaactggatcattacgggcatgtaaatataccgacagcactga 760
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 tatactaagaaatgaactggatcattacgggcatgtaaatataccgacagcactga 1144


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,726
Number of Sequences: 1807
Number of extensions: 13726
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)