BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZH11FM1.SCF screened BAC_end (932 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig885 1090 0.0 >3x_Contig885 Length = 2781 Score = 1090 bits (550), Expect = 0.0 Identities = 604/622 (97%) Strand = Plus / Minus Query: 89 ctacaatctatttacgaaggatgctttaaaactggcccaaatgcattctaacggtaagat 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2364 ctacaatctatttacgaaggatgctttaaaactggcccaaatgcattctaacggtaagat 2305 Query: 149 catttcagtcatggaaggtggttattcggacggtgccattgcatctggtgtcttttcaca 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2304 catttcagtcatggaaggtggttattcggacggtgccattgcatctggtgtcttttcaca 2245 Query: 209 cttgattgggttccaaaatcagaattggatcagcgagtggggttctgaacaagttgttaa 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2244 cttgattgggttccaaaatcagaattggatcagcgagtggggttctgaacaagttgttaa 2185 Query: 269 ggagattatcatatgttgtaaaccaagatggaagccatacaagacaaagaaagctcggga 328 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2184 ggagattatcagaggttgtaaaccaagatggaagccatacaagacaaagaaagctcggga 2125 Query: 329 cgtaataaggatctgggctgaagatgtcatcatgcttggccgcagtatgattccagaatt 388 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 2124 cgtaataaggatctgggctgaagaggtcatcatgcttggccgcagtatgattccagaatt 2065 Query: 389 cgagaaagtgttattcgatacagaggatactgtcactcacccataagtcatactgaccag 448 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 2064 cgagaaagtgttattcgatacagaggatactgtcactcacccagaagtcagactgaccag 2005 Query: 449 atccaagtaccatgagacgattgtcaagcatgataatgatatcccaagatcagagactcc 508 ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| Sbjct: 2004 atccaagtaccatgagacgattgtcaagcatgagaatgagatcccaagaacagagactcc 1945 Query: 509 tactcctgtgcgcagagattagccttcagaatcaccaaaggatgaaaacgtaccgtttgt 568 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 1944 tactcctgtgcgcagagaaaagccttcagaacaaccaaaggatgaaaacgtaccgtttgt 1885 Query: 569 tgatcagatactgcccagcgatgaatagaacgatgaagacgaagattatatttacgatga 628 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 1884 tgatcagatactgcccagcgatgaagagaacgaggaagacgaagattatatttacgatga 1825 Query: 629 ggaattgaaacagacgttcaatagaaccgtagaagactttacatttgacgatatctcgag 688 ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 1824 ggaattgaacaagacgttcaatagaaccgtagaagacattacaattgacgatatctcgag 1765 Query: 689 acatttggaaacgttagacatt 710 |||||||||||||||||||||| Sbjct: 1764 acatttggaaacgttagacatt 1743 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6038 Number of Sequences: 1807 Number of extensions: 6038 Number of successful extensions: 34 Number of sequences better than 1.0e-20: 1 length of query: 932 length of database: 10,358,551 effective HSP length: 16 effective length of query: 916 effective length of database: 10,329,639 effective search space: 9461949324 effective search space used: 9461949324 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)