BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZH12FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 995 0.0
>3x_Contig1782
Length = 24703
Score = 995 bits (502), Expect = 0.0
Identities = 536/546 (98%), Gaps = 1/546 (0%)
Strand = Plus / Plus
Query: 88 tatccttacttggttgtttgcaatgagtttttggggctcttaacatggactagcgacgat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 tatccttacttggttgtttgcaatgagtttttggggctcttaacatggactagcgacgat 4276
Query: 148 atttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttccaagtg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277 atttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttccaagtg 4336
Query: 208 gtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattctgctttg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337 gtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattctgctttg 4396
Query: 268 gatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgcatatc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4397 gatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgcatatc 4456
Query: 328 atttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatggacggga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 atttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatggacggga 4516
Query: 388 aacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaattgtg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4517 aacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaattgtg 4576
Query: 448 tcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgctcacg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 tcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgctcacg 4636
Query: 508 taccattcatcatgggctgtagtcactagaagattattggggaaatttaaagttggccgg 567
||||||||||||||| ||||||||||||||||||||||| ||||||| || |||| ||||
Sbjct: 4637 taccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttgtccgg 4696
Query: 568 ttacttgtcttttacataacccggtcttgattggagtggtggtaacaagcataaaggggg 627
||||||||||||||||||| |||||||||||| |||||||| |||||||||| |||| ||
Sbjct: 4697 ttacttgtcttttacataa-ccggtcttgatttgagtggtgttaacaagcatcaaggtgg 4755
Query: 628 aatctt 633
||||||
Sbjct: 4756 aatctt 4761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6865
Number of Sequences: 1807
Number of extensions: 6865
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)