BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZH12RM1.SCF screened BAC_end (909 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1363 726 0.0 >3x_Contig1363 Length = 5182 Score = 726 bits (366), Expect = 0.0 Identities = 505/540 (93%), Gaps = 9/540 (1%) Strand = Plus / Minus Query: 296 atttatattctatatgatattattaagatcaaggaagatgtactatgtcattaaagtttt 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4944 atttatattctatatgatattattaagatcaaggaagatgtactatgtcattaaggtttt 4885 Query: 356 caataaaggtttctttcgaaatatctggattatctagttgccaaataaggattctgtcta 415 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4884 caataaaggtgtctttcgaaatatctggattatctagttgccaaataaggattctgtcta 4825 Query: 416 atgtttctcccatccaaatgccaggtttcctatccagtaatttcgctagttctttaccgt 475 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4824 atgtgtctcccatccaaatgccaggtttcctatccagtaatttcgctagttctttaccgt 4765 Query: 476 tgatgatatgctttaaagtatagacatcgtctagtttgcaatcgtggacatgctttataa 535 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 4764 tgatgatatgctttaaagtatagacatcgtctagtttgcaatcgtggacatgcttataaa 4705 Query: 536 attcgtcataatgtggaaattggctcatctccatggcgtaaatattccanacatagatta 595 |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 4704 attcgtcataatgtgg-aattggctcatctccatggcgtaaataatccaaacatagatta 4646 Query: 596 tagaaatgaaccatttgccaatttcttaccagtttttctc-aagcaaaaccc-actncga 653 ||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||| ||| Sbjct: 4645 tagaaatgaaccatttgccaa-ttcttaccaagttttctcaaagcaaaacccaactccga 4587 Query: 654 tcttttcattgattgtccattctt-actaaattatgataggaatccccagattcaacac- 711 |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 4586 tcttttcattgattttccattcttaactaaattatgataggaatcctcagattcaacaca 4527 Query: 712 agcgataacggtggctacttgagttttagggaaattt-agcccttttttgtattaacgcc 770 |||||||||| || |||||||||| |||||||| ||| |||| | ||||||| ||||||| Sbjct: 4526 agcgataacgttgtctacttgagtattagggaagtttaagccttcttttgtaataacgcc 4467 Query: 771 acctaaaggtttc-aatttttaagctttgctggatttggccccttt-atcccttgaatcc 828 | |||||||| || |||||||| |||||||||||| ||| |||||| |||| |||||||| Sbjct: 4466 agctaaaggtatcgaatttttaggctttgctggatctgggccctttaatcctttgaatcc 4407 Score = 159 bits (80), Expect = 1e-38 Identities = 167/184 (90%), Gaps = 9/184 (4%) Strand = Plus / Minus Query: 95 acccttcttttcattcttgcacccattagtattgatatctaactagtgtttcaaaagaac 154 |||||||||| |||||| ||||||||| |||| |||||||| |||||||| ||||||| | Sbjct: 5136 acccttctttgcattct-gcacccatt-gtat-gatatcta-ctagtgtt-caaaaga-c 5083 Query: 155 catttcgaacgatcctttttaaaccctcttagggggtaaaaaagtcatcttctgctgatc 214 |||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||| Sbjct: 5082 catttcga-cgatcccttttaa-ccctcttagggg-taaaaaagtcatcttctgctgagg 5026 Query: 215 tggtattcacctcaatttgataataatttaaagctggtaggtaaataagatgctaattag 274 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5025 ctgcaatcacctcaatttgataataatttaaagctggtaggtaaataagatgctaattag 4966 Query: 275 tggt 278 |||| Sbjct: 4965 tggt 4962 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7918 Number of Sequences: 1807 Number of extensions: 7918 Number of successful extensions: 63 Number of sequences better than 1.0e-20: 1 length of query: 909 length of database: 10,358,551 effective HSP length: 16 effective length of query: 893 effective length of database: 10,329,639 effective search space: 9224367627 effective search space used: 9224367627 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)