BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZA01FM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1509                                                         904   0.0  

>3x_Contig1509 
          Length = 8584

 Score =  904 bits (456), Expect = 0.0
 Identities = 513/528 (97%), Gaps = 3/528 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   ttcgattaaattaagaatgtaaggaaagggggtgattaaacaatgtgataggatatgtca 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ttcgattaaattaagaatgtaaggaaagggggtgattaaacaatgtgataggatatgtca 8102

                                                                        
Query: 147  tgttcatgagatcgtgataactatagataatttggggttgataaaaatttataaactaac 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 tgttcatgagatcgtgataactatagataatttggggttgataaaaatttataaactaac 8162

                                                                        
Query: 207  aaatcggggacaatgaaagataagggtgagatggctggtagtggtcagccagctgaagaa 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8163 aaatcggggacaatgaaagataagggtgagatggctggtagtggtcagccagctgaagaa 8222

                                                                        
Query: 267  a-acctggtaaccaccaaagttattcttgttgttcaccaccatttttttttttatctcat 325
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 atacctggtaaccaccaaagttattcttgttgttcaccaccatttttttttttatctcat 8282

                                                                        
Query: 326  taggaaagcagaattgaagtatgtgtgtttttgtgcatttaccatgcgcgccgagatgtt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8283 taggaaagcagaattgaagtatgtgtgtttttgtgcatttaccatgcgcgccgagatgtt 8342

                                                                        
Query: 386  cgatcaaaaatttaattaagtcgtgagtggacaaaagggttttggagttgaaatgcgtaa 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8343 cgatcaaaaatttaattaagtcgtgagtggacaaaagggttttggagttgaaatgcgtaa 8402

                                                                        
Query: 446  gttttatactgttggtgcatttggcatgaaataagccttgacagggaagtaactgtttgt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8403 gttttatactgttggtgcatttggcatgaaataagccttgacagggaagtaactgtttgt 8462

                                                                        
Query: 506  atcatcagcgataccactgtacaatgaattccatccacattcagaggaaagggattccta 565
            |||||||||||||||||||||||| |||| ||| |||||| ||||||||| |||| || |
Sbjct: 8463 atcatcagcgataccactgtacaaggaataccagccacatacagaggaaa-ggataccga 8521

                                                            
Query: 566  aattaccaccatcaattgaaaccctttttgttacccgtgaatgaacct 613
            ||| ||||||| |||| |||| |||| | |||||| ||||||||||||
Sbjct: 8522 aataaccaccagcaatagaaa-ccttctcgttaccggtgaatgaacct 8568


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,174
Number of Sequences: 1807
Number of extensions: 18174
Number of successful extensions: 141
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)