BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA01RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1383 1298 0.0
>3x_Contig1383
Length = 6139
Score = 1298 bits (655), Expect = 0.0
Identities = 754/778 (96%), Gaps = 9/778 (1%)
Strand = Plus / Minus
Query: 45 cttgtctttntaaaatgtgaccacgagacaaattaggagataacttggagacgtaatggt 104
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 cttgtcttttcaaaatgtgaccacgagacaaattaggagataacttggagacgtaatggt 2128
Query: 105 ataattcatcacatttttctttaacgacttccactgcatcactggtttctggtaattcaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ataattcatcacatttttctttaacgacttccactgcatcactggtttctggtaattcaa 2068
Query: 165 ccagagtatcaccttcaccgcacacatacacttcatcctttcttgcatacatttctggcg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 ccagagtatcaccttcaccgcacacatacacttcatcctttcttgcatacatttctggcg 2008
Query: 225 agaaatacttgttggaagatatcttcaattcggtaaatatagcatatggcgaaacagttc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 agaaatacttgttggaagatatcttcaattcggtaaatatagcatatggcgaaacagttc 1948
Query: 285 cggtggatggtttgattgtgatggaatgtgctcttaaaccagagattggacaatccggca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 cggtggatggtttgattgtgatggaatgtgctcttaaaccagagattggacaatccggca 1888
Query: 345 atagtctagaagtccaaggtcccatacatagaacaacctggtcaacgtccaaaaggtcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 atagtctagaagtccaaggtcccatacatagaacaacctggtcaacgtccaaaaggtcaa 1828
Query: 405 ctggttcttgtaaacgttgttcttctggatcatcaactgttggaatgtacgatactcccg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 ctggttcttgtaaacgttgttcttctggatcatcaactgttggaatgtacgatactcccg 1768
Query: 465 ctgcggcacactgatcgttgaaatgcaactgtgacactntgcccaggattaaatccactg 524
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1767 ctgcggcacactgatcgttgaaatgcaactgtgacactttgcccaggattaaatccactg 1708
Query: 525 ccccagtctccattgccttc-acagtagatagtgagtgaatttgaaaagatgtacttgag 583
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 1707 ccccagtctccattgccttcaacagtagatagtgagtgaatttgaaaggatgtacttgag 1648
Query: 584 cagtggagtcagtttcaccaagagatgaccaatctctcaccaaccgttttttgatccagt 643
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 cagtggagtcagttccaccaagagatgaccaatctctcaccaaccgttttttgatccagt 1588
Query: 644 tcaaatcactangtagacgtaatgggtctttagattattgcatcgaggattttgtattca 703
||||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 1587 tcaaatcactaggtagacgtaatgggtctttagataatgcaatcgaggattttgtatcca 1528
Query: 704 actccgnatgca-gtgcctcgtnctcttcatcatcttcttcgtaactattattcgt-atc 761
|||||| ||||| ||||||||| |||||||||||||||| |||||||| ||||||| |||
Sbjct: 1527 actccg-atgcaggtgcctcgtcctcttcatcatcttctccgtaacta-tattcgtaatc 1470
Query: 762 ttcgtccgtcttcagtggtgcccacttttggaaacaggtttccgttgttcaacactgc 819
||||| ||||||||||||||||||| | |||||||||||| ||||||||| ||||||
Sbjct: 1469 ttcgt-cgtcttcagtggtgcccac-tctggaaacaggtt--cgttgttcaccactgc 1416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7478
Number of Sequences: 1807
Number of extensions: 7478
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)