BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA02FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 979 0.0
>3x_Contig1759
Length = 25622
Score = 979 bits (494), Expect = 0.0
Identities = 556/570 (97%), Gaps = 5/570 (0%)
Strand = Plus / Plus
Query: 88 tatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactaccaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10032 tatttcgagccgggtatctcatgagagacaatagtatatccattcactgaaactaccaaa 10091
Query: 148 tcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctttgtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10092 tcagctctttcatctaacatcaaggggcatcggaatttgattctcttgatttcctttgtt 10151
Query: 208 cttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtgtgag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10152 cttttcactttcgattttatgtacgatgcattaatgggattagtactagggccgtgtgag 10211
Query: 268 gatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcatacata 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10212 gatagccatgattgtgcttcgttgatctttgaaccccatttcaagatatctgcatacata 10271
Query: 328 gaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatataatag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10272 gaatcgtcaaatggtttatcttcagaaccaatgaaaaatgtgacaaaattgatataatag 10331
Query: 388 tcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaactca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10332 tcatataaatcgtcgacaacttttctaagacgagatctgctgtcaacgttcaagaactca 10391
Query: 448 gccggtttgtcgtcatcagtaaaaaaaaatatttttcttgttagtccagttgcttctgtc 507
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 10392 gccggtttgtcgtcatcagtaaaaaaaaata-ttttcttgttagt-cagttgcttctgtc 10449
Query: 508 cttctattcgttgtaaaaatgtttctctaactttgatcaatactggagatagttcaattt 567
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 10450 cttctatcggttgtaaaaatgtttctctaactttgatcaatactggagaaagttcaa-tt 10508
Query: 568 gggttgtttgggtctgcgataggaatctcatctttgagaaagtattctatcccggttcta 627
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 10509 gggttgtttgggtctgcgataggaatctcatctttgag-aagtattctat-cctgttcta 10566
Query: 628 tatctttccacaaatcaaatacccgtttca 657
|||||| | ||| |||| |||| |||||||
Sbjct: 10567 tatcttccaacagatcagatacacgtttca 10596
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8061
Number of Sequences: 1807
Number of extensions: 8061
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)