BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC42ZA02RM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1428                                                        1330   0.0  

>3x_Contig1428 
          Length = 9146

 Score = 1330 bits (671), Expect = 0.0
 Identities = 707/715 (98%), Gaps = 3/715 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   gctttaagcaacc-aagtggatcagttagttaag-tcccaatcatctatcaagctagtgg 102
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7726 gctttaagcaacccaagtggatcagttagttaagctcccaatcatctatcaagctagtgg 7667

                                                                        
Query: 103  ctagcgctcttattcaaccagaaggtactcgctggactgtctcatttcccgaacagcgga 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666 ctagcgctcttattcaaccagaaggtactcgctggactgtctcatttcccgaacagcgga 7607

                                                                        
Query: 163  atattaccgaacgataaacctatcgaacgatacggcggaaaacttttcaataactatgga 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 atattaccgaacgataaacctatcgaacgatacggcggaaaacttttcaataactatgga 7547

                                                                        
Query: 223  acctgtattctcgagtagaatctcaattaaatggggtgaacaagagccccacgaggatac 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7546 acctgtattctcgagtagaatctcaattaaatggggtgaacaagagccccacgaggatac 7487

                                                                        
Query: 283  caatacatgggtccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaa 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7486 caatacatgggtccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaa 7427

                                                                        
Query: 343  aaccaatataccacagtggttaataactggagaagaacaagaaattcctacaaaagacgg 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7426 aaccaatataccacagtggttaataactggagaagaacaagaaattcctacaaaagacgg 7367

                                                                        
Query: 403  ctacgagttttctttgaaatttgttcatgaactggattctgtacatggaaatgatcccga 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7366 ctacgagttttctttgaaatttgttcatgaactggattctgtacatggaaatgatcccga 7307

                                                                        
Query: 463  gcgtagtgctgattttggtcatttcaaatccctgacatatagtagtagactcgatgaagg 522
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7306 gcgtagtgctgattttggtcatttcaaatccctgacatatagtagtagactcgaggaagg 7247

                                                                        
Query: 523  ggagatgtataatgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccat 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7246 ggagatgtataatgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccat 7187

                                                                        
Query: 583  tgacccaataagatcttcaacagatcatctagtacccgtagagtctgatatatatgatgg 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7186 tgacccaataagatcttcaacagatcatctagtacccgtagagtctgatatatatgatgg 7127

                                                                        
Query: 643  atctagtgtcacgtctattgtctgggagctgtcggacgacgccaa-aataatgcacgcgg 701
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7126 atctagtgtcacgtctattgtctgggagctgtcggacgacgccaagaataatgcacgcgg 7067

                                                                   
Query: 702  gagattgatcagtttaggaaaagttagtcaaggaattggggattttaacggattg 756
            ||||||||||||| |||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 7066 gagattgatcagtataggaaaagttagtcaaggaattgtggaatataacggattg 7012


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6458
Number of Sequences: 1807
Number of extensions: 6458
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)