BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA03FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1306 0.0
>3x_Contig1802
Length = 45229
Score = 1306 bits (659), Expect = 0.0
Identities = 742/769 (96%), Gaps = 1/769 (0%)
Strand = Plus / Minus
Query: 85 cagacaaatttatgagcatagttatgtatcatataaaaaaagtttataagtgtctcaaag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4649 cagacaaatttatgagcatagttatgtatcatataaaaaaagtttataagtgtctcaaag 4590
Query: 145 taaggttttgaatttgtttataatttatcatttgaattcttgactgtttgtatgcgtaac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4589 taaggttttgaatttgtttataatttatcatttgaattcttgactgtttgtatgcgtaac 4530
Query: 205 atagtttcacgcccattctgcaaggttcggattcgtttcatgaatccggatttttgatca 264
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4529 atagtttcacgcccaaactgcaaggttcggattcgtttcatgaatccggatttttgatca 4470
Query: 265 ctaattgctggtaacacgaactggaaaaattgaatagttttgaagatacagatagccggt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4469 ctaattgctggtaacacgaactggaaaaattgaatagttttgaagatacagatagccggt 4410
Query: 325 acaaacaggaaacctgtttgatagtgattccttttatctattatcaggccggacgaatct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4409 acaaacaggaaacctgtttgatagtgattccttttatctattatcaggccggacgaatct 4350
Query: 385 agattaatagagatcccaacacacaggctgctgcaaacaaaccagaagatgaagcaagtt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4349 agattaatagagatcccaacacacaggctgctgcaaacaaaccagaagatgaagcaagtt 4290
Query: 445 gcttgacaccagctccagcgtaagtacttatagcctgagtggatgaagcagctgttgtga 504
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4289 gcttgacaccagctccagcgtaagtacttagagcctgagtggatgaagcagctgttgtga 4230
Query: 505 cagcaacaggagtggtttcgactgcggaagtgacaacagcaggagtggtttcggtagcag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4229 cagcaacaggagtggtttcgactgcggaagtgacaacagcaggagtggtttcggtagcag 4170
Query: 565 gagtggtttcagcatcagcaggagtagtttcgacagcagcagaagtagtttcgacagcag 624
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4169 gagtggtttcagcagcagcaggagtagtttcgacagcagcagaagtagtttcgacagcag 4110
Query: 625 caagagtagtctcggcagcagcaggagtagtttcggcagcatcagaattagtttcggcag 684
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 4109 caggagtagtctcggcagcagcaggagtagtttcggcagcagcagaagtagtttcggcag 4050
Query: 685 cagcatgaagtagtttcngcagcagcatgagtagtttcggcagcatcatgatttgtttcn 744
||||| | ||||||||| ||||||||| |||||||||||||||| || || | |||||
Sbjct: 4049 cagca-ggagtagtttcggcagcagcagaagtagtttcggcagcagcaggagtagtttcg 3991
Query: 745 gcaacagcattagaatcagtaccagcctggatttggccatcaccggtttgatatacagcg 804
||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 3990 gcaacagcagtagaaccagtaccagcctggatttggccatcaccgatttgagatacagcg 3931
Query: 805 tcaggcctttttttgaaagtgacctttggttctaaagctttaatttcat 853
|||| ||| || | ||||||||||||||||||||||||| || ||||||
Sbjct: 3930 tcagccctcttctggaaagtgacctttggttctaaagctgtagtttcat 3882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7132
Number of Sequences: 1807
Number of extensions: 7132
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)