BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC42ZA04FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1009 0.0
>3x_Contig1320
Length = 7350
Score = 1009 bits (509), Expect = 0.0
Identities = 540/549 (98%), Gaps = 1/549 (0%)
Strand = Plus / Minus
Query: 88 acattacctcatctctctattttttgagcccatgctttgggtacttgaccggtaaattcc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1629 acattacctcatctctctattttttgagcccatgctttgggtacttgaccggtaaattcc 1570
Query: 148 ttacttttacaatacgaaaataattcataggtacgtaaatacaaatgtgaatcggttaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1569 ttacttttacaatacgaaaataattcataggtacgtaaatacaaatgtgaatcggttaat 1510
Query: 208 acaacaagatatattgtcgacattaggaaagtcacagaaaaatcttcaaggatagcgtac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1509 acaacaagatatattgtcgacattaggaaagtcacagaaaaatcttcaaggatagcgtac 1450
Query: 268 actttcgaatacttacaatgcagaatgacaataaagaagaagtgccggctctggctgttt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 actttcgaatacttacaatgcagaatgacaataaagaagaagtgccggctctggctgttt 1390
Query: 328 tactaggctcaaacgttaaaaattggccatattctgaggatacattggttcatgccctac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 tactaggctcaaacgttaaaaattggccatattctgaggatacattggttcatgccctac 1330
Query: 388 aattaaggtctcaacaagaacaaacaaaaagacaatattataaactagagaatgtcaaca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 aattaaggtctcaacaagaacaaacaaaaagacaatattataaactagagaatgtcaaca 1270
Query: 448 agactttagagatgttgaaaactgctgtgagtgctggcattccagtaaatctgatccctc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 agactttagagatgttgaaaactgctgtgagtgctggcattccagtaaatctgatccctc 1210
Query: 508 aattattcaatagtgaccattctggtatggaaaccgaccctgcagatttacgtcatatga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 aattattcaatagtgaccattctggtatggaaaccgaccctgcagatttacgtcatatga 1150
Query: 568 at-atttttaagagcaatcttccttattagcgggccctgacaagcagatgaaatcggtta 626
|| ||| | | ||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct: 1149 atcattctaaggagcaatctcccttattagcggtccctgacaagcagatgaaatcgtata 1090
Query: 627 atttccctc 635
| |||||||
Sbjct: 1089 agttccctc 1081
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7503
Number of Sequences: 1807
Number of extensions: 7503
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)